Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1865 ATGGCATCTACCATAGATGGAGCTTCTTCTTCTTCTTCCTCTGCGTCCATTCGAACGGCACGATGCTCCAGCTCCAACCATGTTTTCTTGAGTTTCAGGGGTGATGACACTCGCAAGGGTTTCACAGACCATCTCTTTGCTTCCTTGGAAAGGAAGGGGATCAAAACTTTCAGGGATGATCATGGTCTTGAGAGGGGAGGACTGATCTCGTTGGAACTCATGAAAGCCATTGAAGAGTCAATGTTTGCAGTGGTCATTCTCTCACCAAACTATGCTTCCTCAACATGGTGCTTAGATGAGCTCCAGAAAATTGTTGAGTGCCGGAAGACTTTTGGTCAAGCGGTTTTTCCGGTGTTCTATGGTGTGGATCCGTCTGATGTGAGGCATCAGAGAGGAAGCTTTGCTAAAGCTTTCAAAGATCATGAAGAGAAATTCAGAGAAGAGGGAGGGAAAGTGGAAAAATGGAGAGAGGCCTTAAGAGAAGTTGCTAGCTATTCTGGTTGGGACTCCAAGGATCGGCACGAGGCAGCACTGGTTGAAACAATTGTTGAAGATGTACAGAAGAAATTGATTCCTAAATTGCCATCTTGCACAGATAACCTTGTTGGGATTGATTCACGGATAAAGGAAGTACATTCACTCTTAGGGATGGGGTTAAGTGATGTTCGCTTCATGGGCATATGGGGCATGGGAGGCATAGGTAAGACGACTATTGCTAGATTGGTCTATGAGGCGATCAAAGAGGAGTTCAAGGTTAGTTGCTTTCTTGCAAACATTAGAGAGGTGTCAAAGGCGAATGGCTTAGCTCAGATCCAAAGGGAGCTTCTTTCTCATCTTAATATCAGAAGCGGTGATTTTTACAATGTTCACGATGGGAAAAAGATATTTGCAAACTCTTTAAGCAACAAGAAGGTTCTTCTTGTTCTTGATGATGTAAGTGAATTAAGCCAATTGGAAAATTTAGCTGGAAAGCAAGAATGGTTTGGTCCAGGAAGCAGAGTAATCATCACAACCAGAGATAAGCACCTGCTAGTGACTCATGGAGTGCATGAAATTTGCAAGGCTAGGGGCTTAGTCCAAAAGGAAGCCCTTAAGCTCTTCTCTTTAAAAGCCTTTAAACAAGACGAACCTGAAGAAGAGTACTCGAGTTTGTGCAAAGAAGTGGTTGAATATACTAGAGGCCTTCCATTGGCACTTGAGGTATTGGGTTCCCATCTTCATAGAAGAACAATTGAGGTTTGGCATAGTGCTTTAGAACAAATAAAAAGTATTCCACACTCCAAAATCCAAGATACGCTGAAAATAAGTTATGACAGCTTACAGTCTATGGAGAAAAATATGTTTCTAGATATTGCCTGTTTCTTCAAAGGGATGGACATTGATGAAGTGATTGAGATATTAAAAAACTGTGGGGATTATCCCCAAATTGGAATTGACATTTTGATTGAAAGATCTTTGGTAACTGTAGATAGCATGCACAATAAGTTGGGGATGCATGATTTGCTTCAAGAAATGGGCAGGAATATTGTATTTCAAGAATCACCAAAAGATCCTGGCAGACGTAGTAGGTTGTGGTCTCAGAAAGACATTGATCAAGTATTGACAAAAAATAAGGGAACTGATAAAATTCAAGGCATAGTTCTAAACTTGGTTCAACCATACGAAGCTCGATGGAGCACTGAAGCCTTCTCCAAGATAAGTGAGCTAAGATTACTCAAGTTATGTGACATGCAACTTCCCCTTGGCCTCAATTGCCTTCCTAGTGCACTAAAGGTTCTTGATTGGAGAGGATGTCCTTTGAAAACCCTCCCACTTGCGAATGAACTGGATGAAGTTATTGACCTCAAATTGTCTCATAGCAAAATAGAACAACTTTGGCATGGGACAAAGGTTCTCGAAAATCTGAAGTCAATCAAGTTGAGTTTTTCCAAGAATCTAAAGCGATCCCCAGACTTGGATGGGGTTCCAAATCTTGAATCATTGGTTCTTGAAGGTTGTACGAGCTTAAATGAGATACATCCATCCCTTCTACGACACAAGAAACTTATTCTAATGAATTTGAAAGACTGCAAAAGGCTCAAAGCTCTTCCATGTAAAATGGAGATGAGTTCCTTGGAGGATATAAATCTTTCTGGTTGCTCTGAATTTAAATATCTTCCAGAGTTTGGGGAAAGCATGAATAATCTATCAGCGCTTTCTTTAGGCGGGACTGCTATAACAAAACTACCCTCATCACTGGGGTGTCTAGTTAGCCTTGCTCTTTTGGATTTAGAGAATTGCAAGAATCTTGTTTGCCTTCCAGATACCATTGCAAATTTGAAGTCCCTCTTAATTCTTGATGTTTCTGGCTGCTCCAAACTCCGTAGCTTGCCAGAGGGTTTGAAGGAACTCAAGTATTTGGAGGAACTTTGTGCAAGCGGAACTGCTATTGAAGAGCTACCCTCTTCTGTGTTTTATTTGGAGAAACTCAAAGTAATATCATTTGCCGGGTGCAAAGGGCCAGTGTCTAAGTCGTTGAATATGTTTCTTCTCCCCTTTAAGTGGCTGTTTGGGAGTCAGCAGCAAGATCCTATTGGATTTAGATTGCCACCTTCTGTATTGTCTCTACCCTCCTTGACGAGTATAAATTTAAGTTACTGCAATCTTTCTGAAGAATCAATGCCAGGTGATTTTTGTCACTTATCTTCATTGATTATGTTAGATCTCACTGGCAACAATTTCGTTACCCCTCCAAGTAGCATTGCCAAATTACCAAAGCTTAAATATCTTCGCCTAAACTGGTGCGAAAAGCTTCAACAGTTGCCAGAGCTTCAACCAAGCATGCAAGAATTGGATGCAAGTAATTGTGCTTCACTGGAAACTTCCAATATCAATCCATGGAGGCCATGCTGTCTCTTTGCATCACCTACACAATGGTGCTTACCTAGAGAACTAAAGAGCCTTCTGGAGGTATGTACCCTGGCTTCCCCAACCTTCTTAAATATGTGTGTTTGTGTGACATAA 3003 0.4136 MASTIDGASSSSSSASIRTARCSSSNHVFLSFRGDDTRKGFTDHLFASLERKGIKTFRDDHGLERGGLISLELMKAIEESMFAVVILSPNYASSTWCLDELQKIVECRKTFGQAVFPVFYGVDPSDVRHQRGSFAKAFKDHEEKFREEGGKVEKWREALREVASYSGWDSKDRHEAALVETIVEDVQKKLIPKLPSCTDNLVGIDSRIKEVHSLLGMGLSDVRFMGIWGMGGIGKTTIARLVYEAIKEEFKVSCFLANIREVSKANGLAQIQRELLSHLNIRSGDFYNVHDGKKIFANSLSNKKVLLVLDDVSELSQLENLAGKQEWFGPGSRVIITTRDKHLLVTHGVHEICKARGLVQKEALKLFSLKAFKQDEPEEEYSSLCKEVVEYTRGLPLALEVLGSHLHRRTIEVWHSALEQIKSIPHSKIQDTLKISYDSLQSMEKNMFLDIACFFKGMDIDEVIEILKNCGDYPQIGIDILIERSLVTVDSMHNKLGMHDLLQEMGRNIVFQESPKDPGRRSRLWSQKDIDQVLTKNKGTDKIQGIVLNLVQPYEARWSTEAFSKISELRLLKLCDMQLPLGLNCLPSALKVLDWRGCPLKTLPLANELDEVIDLKLSHSKIEQLWHGTKVLENLKSIKLSFSKNLKRSPDLDGVPNLESLVLEGCTSLNEIHPSLLRHKKLILMNLKDCKRLKALPCKMEMSSLEDINLSGCSEFKYLPEFGESMNNLSALSLGGTAITKLPSSLGCLVSLALLDLENCKNLVCLPDTIANLKSLLILDVSGCSKLRSLPEGLKELKYLEELCASGTAIEELPSSVFYLEKLKVISFAGCKGPVSKSLNMFLLPFKWLFGSQQQDPIGFRLPPSVLSLPSLTSINLSYCNLSEESMPGDFCHLSSLIMLDLTGNNFVTPPSSIAKLPKLKYLRLNWCEKLQQLPELQPSMQELDASNCASLETSNINPWRPCCLFASPTQWCLPRELKSLLEVCTLASPTFLNMCVCVT* 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1865 1000 Gene3D - 357 447 IPR042197 -
Lja3g1865 1000 PRINTS Disease resistance protein signature 771 787 - -
Lja3g1865 1000 PRINTS Disease resistance protein signature 392 406 - -
Lja3g1865 1000 PRINTS Disease resistance protein signature 224 239 - -
Lja3g1865 1000 PRINTS Disease resistance protein signature 299 313 - -
Lja3g1865 1000 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 451 IPR027417 -
Lja3g1865 1000 Pfam TIR domain 27 203 IPR000157 GO:0007165
Lja3g1865 1000 Gene3D - 22 190 IPR035897 -
Lja3g1865 1000 Pfam NB-ARC domain 215 443 IPR002182 GO:0043531
Lja3g1865 1000 Gene3D Ribonuclease Inhibitor 724 981 IPR032675 -
Lja3g1865 1000 Gene3D Ribonuclease Inhibitor 555 723 IPR032675 -
Lja3g1865 1000 ProSiteProfiles TIR domain profile. 24 190 IPR000157 GO:0007165
Lja3g1865 1000 SUPERFAMILY L domain-like 498 938 - -
Lja3g1865 1000 SUPERFAMILY Toll/Interleukin receptor TIR domain 23 168 IPR035897 -
Lja3g1865 1000 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 20 769 - -
Lja3g1865 1000 SMART till_3 25 165 IPR000157 GO:0007165
Lja3g1865 1000 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 769 IPR044974 GO:0006952
Lja3g1865 1000 Gene3D - 191 351 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1865 Lja-Chr3 21288716 21293588 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1865 33 829 WRKY Transcription Factor Family AT4G12020 33.496 7.70e-119 399