Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1861 ATGAAAGTTGAAATCGTTTCTAGAGAAGACATTAGGCCTTCTTCTCCCACGCCCTCTCACCTCAGGGACTTCAAACTTTCCCTTTTGGATCATCTTATTTCATCCCCATATGCTCCCATAATCCTATTCTATGACTCAAGTAGCCTTTCTCAAGGCTCCAACAAGTTACAATTGCTGAAGCAATCTTTATCTGAGACACTAACCAAGTTCTACCCACTGGGTGGCAGGATCAAAGATGACCTGACCATTGAGTGTAATGATAACGGGGCTAATTTTGTGGAAGCCAAAGTGAACTGTCCACTTTCTATATTTCTAGGCCAGCCTCAGCTGAACTTGCTGCACAAGTTTCTTCCTATTGAACTTTTTTCTCAAGAATCAAATTCAGAAAACTATGTGACTCACATTCAAGTTAACTTCTTTGAATGTGGGGGAATTGCTATAGGCATGTGCATTTCTCACAGGATTGTTGATGGGGCTGCCATGAGCACCTTCCTGAAAGAGTGGTCATGCAGGGCTAGGGGTTGCAATTGCAACCAATTACCCCAACCCAATTTCATAGGATATTCTCTCTTCCCTACAAAAAGTTTATGGCTTAGAGACTTAGCAATGAGTACATGGGCTTCTTTATTCAAGCAAGGCAAGTGGGTCACCAAAAGGTTTCTGTTCAGAAACTCAGATATTGCCCTCCTCAAGGCTCAAATATCAGATTCGGCAATACAACAACCTACACGTGTAGAGATAGTTTCTACAATCTTGTGGAAGTTTCTCATGGCAAAGAGACCTTCCTTGGTGACCCACTTGGTGAACCTGCGCAGGAGAATAGATGAAGCTCTTTCTCCACAGCATGCCATGGGAAACCTTCTTTGGCCCGTGGCTGCGGAGCACATGAGTGATCATGAGACGGATTTGGAAGGGTTGGTGGCTAAGTTGAGGAATGCAATATCAAAAGTCGATGATAAATTTGTTAAGGAATTGCAAGGCGATAACGGAAGGTCCATTATGCAAGATTCTCTAAGAGGAATAGGTGAGACAGGATCCAAGAATGAAGTAGAGTATTTTGCGTTCAGCAGCTGGTGCAATTTTGAGTTCTATGAGGCTGATTTCGGGTGGGGAAAACCCACATGGGTGACTTGTGTTGCTGCAACAGGTTCAGTGTATATGAATCTTATTATGCTGGTTGATACCAGGCTGCGAGATGGCATAGAAGCTTGGGTTACGTTGGTTGAGCAGGACATGACTACTTTGATAGCAAACACTGAACTCCTCAAGTATGCAACCCTGGATCCAAGCCCTTTAGCAATGAGTTCAATAGAAAACATTAGAACTATCTAA 1332 0.4324 MKVEIVSREDIRPSSPTPSHLRDFKLSLLDHLISSPYAPIILFYDSSSLSQGSNKLQLLKQSLSETLTKFYPLGGRIKDDLTIECNDNGANFVEAKVNCPLSIFLGQPQLNLLHKFLPIELFSQESNSENYVTHIQVNFFECGGIAIGMCISHRIVDGAAMSTFLKEWSCRARGCNCNQLPQPNFIGYSLFPTKSLWLRDLAMSTWASLFKQGKWVTKRFLFRNSDIALLKAQISDSAIQQPTRVEIVSTILWKFLMAKRPSLVTHLVNLRRRIDEALSPQHAMGNLLWPVAAEHMSDHETDLEGLVAKLRNAISKVDDKFVKELQGDNGRSIMQDSLRGIGETGSKNEVEYFAFSSWCNFEFYEADFGWGKPTWVTCVAATGSVYMNLIMLVDTRLRDGIEAWVTLVEQDMTTLIANTELLKYATLDPSPLAMSSIENIRTI* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1861 443 PANTHER F21J9.9 3 434 - -
Lja3g1861 443 Pfam Transferase family 1 420 - -
Lja3g1861 443 Gene3D - 213 423 IPR023213 -
Lja3g1861 443 PANTHER VINORINE SYNTHASE-LIKE 3 434 - -
Lja3g1861 443 Gene3D - 1 197 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1861 Lja-Chr3 21211245 21212576 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1861 1 400 Monolignol Biosynthesis Gene Families AT5G48930 24.654 1.05e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1861 - - lja:Lj0g3v0064629.1 868.226