Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1859 ATGGCGTCTGTTAGGTTTTCCCATTTAAGACATCTACATAGTTCAATCAATGGTTCTCTTAACACGAAGCTAGTTCCACAGTACCAAAATCACCACAATGTAGCTATGAACCTTGCAAGGTTGCCTTGTGATTTGTTGTCCCGTCCTTACTCCAAAGGAGAGTCACAGTCACCTAGGGTTTTTGCTCAGAACCAGTTTACCAATGCCTCATTTTATCCTAGGTCATCTAGCTTTTGTCTCCAGGGTACTATTCCTTTTGCTTCCATGACCCACATGTTGAGTAGCCGAAGTTATTCGTCGTCGTTGGGTGGAAATGGTAGCAAGGGTGGTGGTGACACACAAGTTTCTGCTGGTTCTGGTGTGAGTGATATGAATGCTGGTGGTGGTGGTGATTGGGCTGAGAGGGTTAAAGATACTTGGAAGAGTGTGGTAGAGACGGCATCGTATGCGGGACAAAAGGTTAAAGAAGCTTCTGATGATCTTACTCCACATGCTCAACAGTTGCTTGATTCACATCCGTATCTTAACGCGGTGGTTATTCCGGTTGGTGGTACTTTAACTGCTACTCTAGTAGCTTGGTTCTTGATGCCTACGATTTTGAGGAAATTTCACAAATATGCTATGCAAGGTCCTGTTGCTCTAATTCCAGGAAGCTTGTTTGGGGAACCAGTTCCTTATGAGAAAAGCTTTTGGGGTGCTCTGGAAGACCCAGTGCGATATCTAGTTACCTTCATGGCATTCTCACAAATTGGTGTAATGGTAGCTCCAACAACCATAGCCTCGCAATATCTTGCACCAGCTTGGAGGGGTGCGGTGATACTTTCGTTTGTATGGTTTCTGCATAGATGGAAAACTAATGTTTTTGCACGGACATTGTCTGGTCAAAATTCACTTGGACTTGATAGGGAGAAATTACTTGCTCTAGACAAAATCTCATCTGTTGGTCTATTTGTGATTGGTATAATGGCTTTGGCTGAGGCTTGTGGTGTGGCTGTGCAATCTATTGTAACTGTTGGTGGTATAGGAGGAGTGGCGAGTGCTTTTGCTGCCAGAGATATTCTTGGCAATGTGTTCAGTGGTTTATCTATGCAGTTTTCTAAGCCCTTTTCAATTGGAGATACAATAAAAGCTGGCTCGATAGAGGGTCAAGTGGTGGAAATGGGTCTTACTACCACATCTTTACTGAGTGCTGAGAAGTTCCCAGTCATAGTGCCAAACTCCTTATTCTCTAGCCAGGTCATTGTGAACAAATCCCGTGCTGAATACCGTGCCATTATTACGAAAATTCCTCTGCAAATTGAGGATTTAAGTAAGATTCCTCAGATATCAGGCGATGTAAAAAACATGTTAACATCAAATGCGAAGGTTTTCCTAGGAAAAGATGTTCCCTACTGTTTCTTGTCGCGAGTAGAAAGTTCATATGCAGAATTGACTCTTGGATACAACCTCAAGCACATGCGCAAAGATGAGTTATACTCTGCAGAACAAGATATTCTCCTGCAGGCCGTTCAGATCATTAAAAATCATGGGATTGCCCTTGGCAGCACAGGGCAGGGCATGTCTACTATGTAA 1572 0.4338 MASVRFSHLRHLHSSINGSLNTKLVPQYQNHHNVAMNLARLPCDLLSRPYSKGESQSPRVFAQNQFTNASFYPRSSSFCLQGTIPFASMTHMLSSRSYSSSLGGNGSKGGGDTQVSAGSGVSDMNAGGGGDWAERVKDTWKSVVETASYAGQKVKEASDDLTPHAQQLLDSHPYLNAVVIPVGGTLTATLVAWFLMPTILRKFHKYAMQGPVALIPGSLFGEPVPYEKSFWGALEDPVRYLVTFMAFSQIGVMVAPTTIASQYLAPAWRGAVILSFVWFLHRWKTNVFARTLSGQNSLGLDREKLLALDKISSVGLFVIGIMALAEACGVAVQSIVTVGGIGGVASAFAARDILGNVFSGLSMQFSKPFSIGDTIKAGSIEGQVVEMGLTTTSLLSAEKFPVIVPNSLFSSQVIVNKSRAEYRAIITKIPLQIEDLSKIPQISGDVKNMLTSNAKVFLGKDVPYCFLSRVESSYAELTLGYNLKHMRKDELYSAEQDILLQAVQIIKNHGIALGSTGQGMSTM* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1859 523 Pfam Mechanosensitive ion channel 310 512 IPR006685 GO:0016020|GO:0055085
Lja3g1859 523 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 73 518 - -
Lja3g1859 523 Gene3D - 268 367 - -
Lja3g1859 523 MobiDBLite consensus disorder prediction 100 121 - -
Lja3g1859 523 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 267 350 IPR011014 GO:0016020
Lja3g1859 523 MobiDBLite consensus disorder prediction 100 130 - -
Lja3g1859 523 SUPERFAMILY Sm-like ribonucleoproteins 352 417 IPR010920 -
Lja3g1859 523 Gene3D - 368 416 IPR023408 -
Lja3g1859 523 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1, MITOCHONDRIAL-RELATED 73 518 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1859 1 516 Mechanosensitive Ion Channel Family AT4G00290 57.447 0.0 569
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1859 K22047 - gmx:100789047 780.4