Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1855 ATGTCAGTCTACGACGCCGCATTCGTCGACACAGAGCTTTCCAAACGCACCTCAATCTTCGGCCTCCACCTCTGGGTCGTAATCGGAATCCTCGTCGGCTCTCTCATCGTCATCTCCCTCTTCCTCCTCTCTCTCTGCCTCACCCGCCGCCGCCGCCGCACAACCAAAACCTCCTCCGCCGCCGCTGCCATTCCCTCCGCCACCCCCGTCGTCTCCAAGGAAATCCAGGAGATCGTCCACATCCCCACTTTGCCAGAGATCCACATCGACCCCATCAAACCTCACCATGCCTCCACCAGCGGCGAGAGCAAGGGGACTGCCAGCGTCTGTGAAACGGCATCGTCGTTTGGGAGTGGGAGTGTGGGCCCTGAAGTGTCGCATCTTGGGTGGGGGAGGTGGTATACGCTCAGGGAGCTGGAGGCTGCCACCAATGGACTGTGTGAGGAGAATGTGATTGGAGAAGGTGGATATGGAATCGTTTACCGTGGATTGCTCCCTGATGGTGCCAAGGTTGCTGTCAAGAATCTTCTGAATAACAAGGGCCAGGCCGAGAGAGAATTTAAAGTAGAGGTAGAAGTAATTGGCCGTGTGCGGCACAAGAATCTTGTTAGGCTGCTCGGATACTGTGTTGAGGGGGCATACAGGATGCTTGTGTATGAATATGTTGATAATGGCAATCTGGAGCAATGGCTGCATGGGGATGTTGGATCTGTAAGCCCTATGACATGGGATATCCGGATGAACATTATATTGGGCACAGCAAAAGGATTGGCTTATCTTCACGAGGGTCTTGAGCCAAAAGTTGTTCACCGAGATGTGAAATCAAGTAACATACTCCTTGATCGCCAATGGAACTCCAAGGTTTCTGATTTTGGGCTTGCCAAGCTTTTACATTCTGATCACAGCTATGTCACCACTCGAGTGATGGGGACATTTGGTTATGTTGCACCAGAGTATGCCTGCACTGGAATGCTAACTGAGAAGAGTGACATTTATAGCTTTGGGGTACTTATCTTGGAAATAATCACTGGGAGAAGTCCTGTTGATTATAGTAGACCGCAAGGAGAGGTTAATTTAATTGAGTGGTTGAAAACTATGGTTGGTAATCGAAAATCCGAGGAAGTAGTTGATCCTAAGCTTCCTGAGAAACCATCTTCAAAGGCTCTTAAACGTGCCCTGTTGGTTGCTCTTCGATGTGTTGACCCTGACGCGTCAAAGAGGCCTAAAATAGGACATGTTATCCACATGCTTGAAGCTGACGACCTCTTATTCCGTGATGAACGAAGGATTGGGGGAGAATCTTCTCATTCCCATCGTGATTATCGACGTGAGCGTAGGGATTCAAGTTTAGATAGAAATCGGGTAGCTGAAGATATTACTGATCAAAGTGAAGATGACAGTAGTAGACATAACCTTCTGCCCACTAGGTTGAGAAGATAG 1440 0.4931 MSVYDAAFVDTELSKRTSIFGLHLWVVIGILVGSLIVISLFLLSLCLTRRRRRTTKTSSAAAAIPSATPVVSKEIQEIVHIPTLPEIHIDPIKPHHASTSGESKGTASVCETASSFGSGSVGPEVSHLGWGRWYTLRELEAATNGLCEENVIGEGGYGIVYRGLLPDGAKVAVKNLLNNKGQAEREFKVEVEVIGRVRHKNLVRLLGYCVEGAYRMLVYEYVDNGNLEQWLHGDVGSVSPMTWDIRMNIILGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRQWNSKVSDFGLAKLLHSDHSYVTTRVMGTFGYVAPEYACTGMLTEKSDIYSFGVLILEIITGRSPVDYSRPQGEVNLIEWLKTMVGNRKSEEVVDPKLPEKPSSKALKRALLVALRCVDPDASKRPKIGHVIHMLEADDLLFRDERRIGGESSHSHRDYRRERRDSSLDRNRVAEDITDQSEDDSSRHNLLPTRLRR* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1855 479 SMART serkin_6 146 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1855 479 MobiDBLite consensus disorder prediction 432 479 - -
Lja3g1855 479 PANTHER OS01G0323000 PROTEIN 1 436 - -
Lja3g1855 479 PANTHER BNACNNG08720D PROTEIN 1 436 - -
Lja3g1855 479 Gene3D Transferase(Phosphotransferase) domain 1 222 429 - -
Lja3g1855 479 ProSitePatterns Protein kinases ATP-binding region signature. 152 174 IPR017441 GO:0005524
Lja3g1855 479 ProSiteProfiles Protein kinase domain profile. 146 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1855 479 Gene3D Phosphorylase Kinase; domain 1 127 221 - -
Lja3g1855 479 SUPERFAMILY Protein kinase-like (PK-like) 124 418 IPR011009 -
Lja3g1855 479 CDD STKc_IRAK 152 418 - -
Lja3g1855 479 Pfam Protein kinase domain 149 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1855 479 MobiDBLite consensus disorder prediction 432 473 - -
Lja3g1855 479 ProSitePatterns Serine/Threonine protein kinases active-site signature. 268 280 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1855 Lja-Chr3 21159324 21162477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1855 26 418 Trihelix Transcription Factor Family AT5G38560 41.855 6.92e-97 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Lja3g1855 Pkinase 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1855 - - gmx:100777348 711.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0134 1 1120978 1125243 Lja3g1855 3 21159324 21162477 PCT
Lja1g3060 1 37122339 37126643 Lja3g1855 3 21159324 21162477 PCT