Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1854 ATGGTGTCACTGAACCCTAACCCAGCTCAAGGGTTTTACTTCTTCGATCCTTCCAATATGGGCCTTCCCGGTGTCAACTCTCTCCCTCCGCCGCCGCCACCTCCTTCTACCACCGCCGCTGCAGCCGAGGATCCGAGTAAGAAGATCCGGAAGCCATATACGATTACCAAGTCCAGGGAGAGCTGGACCGAGCAGGAGCACGATAAGTTTCTAGAAGCTCTTCAATTATTTGATCGTGACTGGAAAAAGATTGAAGCATTCATCGGTTCGAAAACAGTTATCCAGATACGAAGTCACGCGCAGAAGTATTTTCTCAAAGTTCAGAAGAATGGAACAAGTGAGCATGTACCTCCTCCTCGGCCCAAGAGAAAAGCTGCTCACCCATACCCTCAAAAAGCTCCCAAAAATGCTCCTACATCCCAAGCCACAGGGCCATTGCAATCTTCGTCTGCTTTTATTGAACCTGCATATATTTATAGTTCAGATTCATCATCTGTGCTTGGAACACCAGTTACTAGTGTGCCTTTATCATCTTGGAATTATAGGGCTATACCATCATCTAGTGTGCCACCAGGGACAAGAGATATGGGATTGACTGGAGCTGGGCAAGCTGTTCCTCTGAATAGTTGTTATAGTAGCAGCAATGAGAGCACCCCTCCTGCTCGGCCAAGTAGCGAAGGGATTAATCAATGCAACCAGCGGCAGCCAATTAAAGTAATGCCAGACTTCGCACAAGTATACCGCTTCATCGGCAGTGTATTTGATCCAGATTCAACTAATCACTTACAGAGACTAAAACAGATGGATCCAATAAATGTGGAGACGGCGTTGCTATTGATGAAGAACCTCTCCATCAATTTGAGGAGTCCTGAATTTGAGGATCATAAGAGGCTGATTTCATCTTATGATGCTGACTCTGAGAAGCCGAAGTCTGTTAAATCTGAGAGCGTTCTTCTGTCTGTGTAG 966 0.4627 MVSLNPNPAQGFYFFDPSNMGLPGVNSLPPPPPPPSTTAAAAEDPSKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPPRPKRKAAHPYPQKAPKNAPTSQATGPLQSSSAFIEPAYIYSSDSSSVLGTPVTSVPLSSWNYRAIPSSSVPPGTRDMGLTGAGQAVPLNSCYSSSNESTPPARPSSEGINQCNQRQPIKVMPDFAQVYRFIGSVFDPDSTNHLQRLKQMDPINVETALLLMKNLSINLRSPEFEDHKRLISSYDADSEKPKSVKSESVLLSV* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1854 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Lja3g1854 321 MobiDBLite consensus disorder prediction 108 146 - -
Lja3g1854 321 CDD SANT 61 104 IPR001005 -
Lja3g1854 321 SUPERFAMILY Homeodomain-like 53 109 IPR009057 -
Lja3g1854 321 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 57 106 IPR006447 GO:0003677
Lja3g1854 321 Pfam Myb-like DNA-binding domain 59 104 IPR001005 -
Lja3g1854 321 ProSiteProfiles SANT domain profile. 57 110 IPR017884 -
Lja3g1854 321 PANTHER SWI/SNF COMPLEX-RELATED 2 315 - -
Lja3g1854 321 MobiDBLite consensus disorder prediction 23 49 - -
Lja3g1854 321 SMART sant 58 106 IPR001005 -
Lja3g1854 321 MobiDBLite consensus disorder prediction 24 39 - -
Lja3g1854 321 PANTHER MYB TRANSCRIPTION FACTOR 2 315 - -
Lja3g1854 321 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Lja3g1854 321 Gene3D - 62 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1854 Lja-Chr3 21113841 21119896 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja3g1854 Myb_DNA-binding 5.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1854 - - gmx:778090 485.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1854 3 21113841 21119896 Lja3g1854 3 21113841 21119896 ECH