Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1852 ATGGTGGACCTGAACCAAAATGTTACCGCCGTGGCTCATTCCCAAAAGTCCACTCAGAACGGGCCAAAACCTAATGAGGAGAAAATGGCGGTTCTACCGTGGCTCACCACCACCGGCGACAACAATGCTGCACCCGAAGGTGCCGGAGTGGAGGCTTCACCGGAACCCATTGCCGAAGAAGCATCTGTGGCTGCAGGATCGAGACAGGTGGTGAAAAGGGGGAGGCCTCGAAAGCCCGACGTTGACAAGAGGCAGCTGTATCGGGCGATTACGCCGCCGCCGGGGTTCGTTGTTCAACCTTTTGAAGGAGGAAATGGTATTAAGAGAGGCAGGGGACGCCCTCGTGGCTCTGGGAGGCTGCAAATTCTGGCCTCCATTGGGGGGCTTGTGGCAGAAACAACTGGGACAGGTTTCACACCTCGTGTGGTGACTGTGAATGCTGGGGAGGACATGGTCAGCAAGATAACATCATGTTATCAGAGAGGCCCTATGTCAGTTTGTATCGTTTCTGCTACTGGTCTTGTATCAAGTGTCACCATTCGTGAACCTGGTTCTACTAACACATCGAGTTATGAGGGCCGTTTCGAAATTGTGTCCTTAACTGGATCATACGCCTTTTCTACTGGAGCTGAGGGTGCACATACAAAAAGTTTGTTGCTGAGTGTTTCATTGGCTAAACGTAATGGTCAGCTTTTTGGTGGGAACATTGAGAGTTCCTTGATAGCTGCTGGCCCCATCCAGCTTATACTGGCCACATTCAAGCAAAAGATCACAAATCAAACTAAGAAAAGACGCTCATCTGATTCATCTAATGCTCTCAGCATATCAGGTAATCCAGATTCAGAAAATGAGGATCTCCAGAAAGCCCCTAGGTTAACTTAA 882 0.4989 MVDLNQNVTAVAHSQKSTQNGPKPNEEKMAVLPWLTTTGDNNAAPEGAGVEASPEPIAEEASVAAGSRQVVKRGRPRKPDVDKRQLYRAITPPPGFVVQPFEGGNGIKRGRGRPRGSGRLQILASIGGLVAETTGTGFTPRVVTVNAGEDMVSKITSCYQRGPMSVCIVSATGLVSSVTIREPGSTNTSSYEGRFEIVSLTGSYAFSTGAEGAHTKSLLLSVSLAKRNGQLFGGNIESSLIAAGPIQLILATFKQKITNQTKKRRSSDSSNALSISGNPDSENEDLQKAPRLT* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1852 293 MobiDBLite consensus disorder prediction 1 24 - -
Lja3g1852 293 MobiDBLite consensus disorder prediction 1 83 - -
Lja3g1852 293 SUPERFAMILY AF0104/ALDC/Ptd012-like 137 260 - -
Lja3g1852 293 PANTHER DUF296 DOMAIN PROTEIN 14 292 - -
Lja3g1852 293 MobiDBLite consensus disorder prediction 264 283 - -
Lja3g1852 293 CDD DUF296 139 253 IPR005175 -
Lja3g1852 293 ProSiteProfiles PPC domain profile profile. 135 276 IPR005175 -
Lja3g1852 293 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 14 292 IPR039605 GO:0003680
Lja3g1852 293 Gene3D - 141 276 - -
Lja3g1852 293 MobiDBLite consensus disorder prediction 260 293 - -
Lja3g1852 293 Pfam Plants and Prokaryotes Conserved (PCC) domain 140 254 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1852 Lja-Chr3 21079959 21084724 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1852 72 253 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 42.857 2.46e-37 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1852 - - mtr:MTR_4g055803 214.927