Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1847 ATGGTAGATGGCGGCGAATTCGCCGGCACCATTTGCTCGATCTGCTACGAAGGTCTCAAACCCGTCACCGAAGATCTCCAATCCATCTCCATCTGCGGCCATGTCTTCCACGAGCTCTGCTTGCAGCAATGGTTCGAGTACTGTTCGAAATCGAAGAAGCAAACCTGCCCTGTGTGCAAGCAGAGTTGCAAGGGCAACGACGCGTGCCGGCTTTATTTTCAGTCCGTTGGAGACGCGAGCGACGCTGTTCCCACTCAGAAGTGTGTTGATTTTGAGGAAGATGCTGGTGTTCTGCGAAGGGAAGTGAAGAGGTTCGAGGCCAAAGTTTCGGGGCTTAGTTCGGTTGTGGAACGCCAAAAAAAGGAGTTACAAGAACTTAACGAAGAGTTGTGTGTTTGCAAGGAGAAGGCAAAGATAGAATCAGCATTTAAGAATGAGGCTATAAGGCAAAAATCATCTATACATTCCCAGCTTAATATCAAACTAGAGGAGCTTAGCAAGTCAACTTCAGAATGCTCTAAATTACGGGACATAAATATGGCTTTGGCTAAAGAAGTTGCAGCATTAAAATTAGTGGCTGATGTGGACCTTGATGAAGATGAGATTTTGAAGCTTGCCACCTTAGGTAATGGGGCTAACAGTAAAGACACGATAGACACATTGAAAAGATCTCTTGTCCTGCGGAACAGGAGTTACAAAGAATTAATGGCCAAGTGCAATGTTCTAGGAAGAGGTGAGGCTCGATATAGTAAAAAGCATGAGAAGGCTAAAGAGAAGATCATTAAATTGAAGGCTAGGGTACACGAACTGGAGAGAGCAGCTGAAGTAAAAGAGAATGAATATTTGATGTCTCTGAAAGTTTCAAAGAAAACCAAGTCTTCAAAGAAGGGTTATGAGAATAGCACCAATTCTGATTCTGATGTATTCACAGCTGGCAAATTTTCTTTAGATGAGCAGAGCAAACAAATTTCGACGCCCAAATCTGGAATTGATCTGACTGCGAAGAGTGGCAGTAATTATTTACAATCTTTGAAGATACAGAACTCCAATTCTACTAAAAATGAAGCTGTGAATATTAGTAATGGAAGTAAAACTACCTTGTCAATGGATGAAGACATAGATTGTATCCTTATTGATGATGATGCTACTGAATGTACTTTTAGCAAGCCGCTTGCGAAGCCAGAAGCAGCACCTGGCATAGTGACTGAAACATCATTGCAACGAAAATGCAACTTGGTTGAGTCTTCAAGGGTTGATATTGGACTGGATGACATTTCTACTGGCAATATGGATGAAGATGTTACGTTACAAGCTAATGTTAAACAAGCTCAACCTGTGGTTAACATTAGAAAGGAGTCAACATTAACACCTTCAAGTTCAGCCTCAGGGGACATCTGCTTTTCTGGTGGGTTGATTGGTCCTGATGGTACTCATCGATACTTGGGTAAATGGTGCAAGCGTGGACAAAATAGTGAATCAACATCTGCAAAAGGATCAAGTAATGGGGATTTAATATCGGTTGGAGCTGATGGTAGAGGTGGCAGAATAAAAGTTCTAAGGACTCAAGGCCAAAGCTTCCCGGATGGAATGGAAAATTCTACAAGTTCAAAAAGGTTGAAGTTAGGACCTAAAACAACTAGTTTGCAGTCCAGGGGGTGCCTGCAGATAGAACACTTCTTTGGGAGGGTAAGTCAGTGA 1698 0.4252 MVDGGEFAGTICSICYEGLKPVTEDLQSISICGHVFHELCLQQWFEYCSKSKKQTCPVCKQSCKGNDACRLYFQSVGDASDAVPTQKCVDFEEDAGVLRREVKRFEAKVSGLSSVVERQKKELQELNEELCVCKEKAKIESAFKNEAIRQKSSIHSQLNIKLEELSKSTSECSKLRDINMALAKEVAALKLVADVDLDEDEILKLATLGNGANSKDTIDTLKRSLVLRNRSYKELMAKCNVLGRGEARYSKKHEKAKEKIIKLKARVHELERAAEVKENEYLMSLKVSKKTKSSKKGYENSTNSDSDVFTAGKFSLDEQSKQISTPKSGIDLTAKSGSNYLQSLKIQNSNSTKNEAVNISNGSKTTLSMDEDIDCILIDDDATECTFSKPLAKPEAAPGIVTETSLQRKCNLVESSRVDIGLDDISTGNMDEDVTLQANVKQAQPVVNIRKESTLTPSSSASGDICFSGGLIGPDGTHRYLGKWCKRGQNSESTSAKGSSNGDLISVGADGRGGRIKVLRTQGQSFPDGMENSTSSKRLKLGPKTTSLQSRGCLQIEHFFGRVSQ* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1847 565 CDD RING-H2 12 60 - -
Lja3g1847 565 Pfam Ring finger domain 11 60 IPR001841 -
Lja3g1847 565 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 66 IPR013083 -
Lja3g1847 565 MobiDBLite consensus disorder prediction 524 544 - -
Lja3g1847 565 ProSiteProfiles Zinc finger RING-type profile. 12 60 IPR001841 -
Lja3g1847 565 SUPERFAMILY RING/U-box 10 63 - -
Lja3g1847 565 SMART ring_2 12 59 IPR001841 -
Lja3g1847 565 SMART ringv_2 11 60 IPR011016 GO:0008270
Lja3g1847 565 MobiDBLite consensus disorder prediction 525 544 - -
Lja3g1847 565 Coils Coil 246 280 - -
Lja3g1847 565 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 564 - -
Lja3g1847 565 Coils Coil 109 129 - -
Lja3g1847 565 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 564 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1847 1 565 C3H Transcription Factor Family AT4G01270 44.406 4.92e-133 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1847 K11985 - gmx:100812811 721.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1847 3 20959145 20962927 Lja3g1847 3 20959145 20962927 ECH