Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1845 ATGGACGACGATTGGGATCTCCACGCCGTCGTCAGAGGCTGCACCACCGTCACCTCTTCCTCCTCCTCCTTCTCCGCCGCCGCCACCGCCTCCTCTGTTTCTTCCCCTGCTATTGGGAGTTCTTACCAATCTTCACCTCCCTCCACCTTCTTCCCAGCAAGCCAAGTTTTGTCCCTTTCAAACCCCTTTGAATCAAAGGGTTCCATTGGTGGACTTCATGAGCTATGCAAGCCTTTCTTCATCAAATCACAGGCTCCTCCTTTCTCTTATTCACCCAAATCGCCTCCTCAGATGAAGCAAAAACAACAGCAACCGCAGCAGCATCACCTTGCTGGTTCTGGTTCTGGTTCTGCCACCACCCCACGATCTAAAAGAAGGAAGAATCAGTTTAAGAAGGTTTGTCAAGTTTCAGCTGAGAATCTCTCTTCAGACATATGGGCATGGAGGAAATATGGTCAGAAACCTATCAAAGGGTCACCATATCCAAGGGGATATTACAGATGTAGCAGCTCAAAAGGGTGTTTAGCTAGGAAACAAGTGGAGAGGAACAAATCAGAACCAGCAATGTTCATTGTCACCTACACAGGGGAACACAACCACCCTGCCCCCACTCATCGGAATTCCCTTGCTGGCTCCACCCGCCAGAAGCCATTGACACCTGAAACCGCCACTGCAGGGGACTCTGGCGGCAAAGCACTGACAAATCCCGTTTCTCCAGAGACCCCAGGGGCGGAAGAAGATGGGGTTGCACCCCTATCAGAGAGCAAAGAGGATTTGGAGGATTTGATGAATGATGATGATGGAGAAGAACATGAATTTGGGGTGTCAGATATGTTGGTAACAGATGATTTCTTTGAGGGTTTAGATGAACTGACAGGGTCTGCAGTTGTAGGTACTACTGAAGACTGTTCTGGTGACCCATTTGTAGGTGGTGGTGGTGGTATTACTCTTCCTTCTTGGGTGGCCAGTAATGCTGCCACTGCTGCTGGTGGTAGCTGA 999 0.4985 MDDDWDLHAVVRGCTTVTSSSSSFSAAATASSVSSPAIGSSYQSSPPSTFFPASQVLSLSNPFESKGSIGGLHELCKPFFIKSQAPPFSYSPKSPPQMKQKQQQPQQHHLAGSGSGSATTPRSKRRKNQFKKVCQVSAENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNKSEPAMFIVTYTGEHNHPAPTHRNSLAGSTRQKPLTPETATAGDSGGKALTNPVSPETPGAEEDGVAPLSESKEDLEDLMNDDDGEEHEFGVSDMLVTDDFFEGLDELTGSAVVGTTEDCSGDPFVGGGGGITLPSWVASNAATAAGGS* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1845 332 SUPERFAMILY WRKY DNA-binding domain 137 203 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja3g1845 332 MobiDBLite consensus disorder prediction 89 130 - -
Lja3g1845 332 Gene3D WRKY domain 126 196 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja3g1845 332 ProSiteProfiles WRKY domain profile. 137 203 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja3g1845 332 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 310 IPR044810 GO:0003700
Lja3g1845 332 MobiDBLite consensus disorder prediction 200 235 - -
Lja3g1845 332 SMART WRKY_cls 142 202 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja3g1845 332 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 310 - -
Lja3g1845 332 MobiDBLite consensus disorder prediction 197 270 - -
Lja3g1845 332 MobiDBLite consensus disorder prediction 94 123 - -
Lja3g1845 332 Pfam WRKY DNA -binding domain 144 201 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1845 Lja-Chr3 20906793 20908656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1845 1 331 WRKY Transcription Factor Family AT4G01250 46.903 8.87e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja3g1845 WRKY 1.1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1845 K13425 - gmx:100170675 358.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1845 3 20906793 20908656 Lja5g0674 5 6073274 6074802 ECH
Lja3g1845 3 20906793 20908656 Lja3g1845 3 20906793 20908656 ECH
Lja3g1845 3 20906793 20908656 Lja1g3051 1 36914094 36915753 ECH
Lja4g0384 4 3088280 3090114 Lja3g1845 3 20906793 20908656 ECH
Lja1g3051 1 36914094 36915753 Lja3g1845 3 20906793 20908656 PCT