Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1837 ATGTCCTCTCCTCCTTACCCTTACAGTTACTCTTCACCACCACCACCACCACCCACTTCCCCTTACCTCACCAACCTCGGCTTCGGCTACTCAATCGCCATCGCCCTCGGCTTCCTCTTCCTCCTCTCAACCCTCATCCTCTCTTCCTACCTCTGCTGCCGTGCTCTCCGCCACAACCGCCGCCGCGCCCCCGACGGCGTTGTTCTGCCGCGCATCATCTTCGTCGCCGAGGACGGCGACGAGGAGGAGGGGCCGCGCGTGTCGGGTCTGGACCCGAACGTGATCAACTCGTACCCGAGGTTCCAGTACGCGGCGGCGGAACGCGGCCACGGCGAAACCACGTGCTCGATCTGCCTCTGCGAGTTTAAGGAAGCGGAGATGCTGAGGATGATGCCGGAGTGCCGCCACCATTTTCACCTCTGTTGCCTTGACTCGTGGCTGAAGCTTAATGGGTCTTGCCCTGTTTGCCGGAACTCGCCGATGCCGACGCCGTTGTCGACGCCGCTGCAGGAAGTGGTGCCGCTCTCTCAGTACGCCCGCTGA 543 0.6262 MSSPPYPYSYSSPPPPPPTSPYLTNLGFGYSIAIALGFLFLLSTLILSSYLCCRALRHNRRRAPDGVVLPRIIFVAEDGDEEEGPRVSGLDPNVINSYPRFQYAAAERGHGETTCSICLCEFKEAEMLRMMPECRHHFHLCCLDSWLKLNGSCPVCRNSPMPTPLSTPLQEVVPLSQYAR* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1837 180 PANTHER RING-H2 FINGER PROTEIN ATL67 11 179 IPR044289 GO:0016567|GO:0016740
Lja3g1837 180 Pfam Ring finger domain 114 157 IPR001841 -
Lja3g1837 180 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Lja3g1837 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 162 IPR013083 -
Lja3g1837 180 SUPERFAMILY RING/U-box 106 161 - -
Lja3g1837 180 SMART ring_2 115 156 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1837 Lja-Chr3 20873490 20874822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1837 18 180 C3H Transcription Factor Family AT5G07040 41.212 2.85e-36 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1837 - - vra:106773185 253.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1837 3 20873490 20874822 Lja3g1837 3 20873490 20874822 ECH
Lja1g3045 1 36835944 36837101 Lja3g1837 3 20873490 20874822 PCT