Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1820 ATGCCGAAGAACAAGGGAAAGGGAGGGAAGAATCGCAAGAGAGGAAAGAACGAAGCCGACGACGAGAAGAGAGAGCTCGTATTCAAGGAAGACGGCCAGGAGTACGCGCAGGTCCTCCGCATGCTCGGAAACGGCCGCTGTGAAGCCACCTGCATCGACGGAACCAAGCGGCTCTGCCACATCCGCGGTAAGATGCACAAGAAGGTCTGGATCGCCGCCGGCGACATCGTCCTCGTTGGGCTCCGTGATTACCAGGATGATAAGGCGGATGTGATTCTGAAGTATATGCCTGATGAGGCTAGGCTTCTGAAGGCGTATGGAGAGCTTCCGGATAGTACGAGACTGAATGAGGGGATTGGTGGTGGCTTGGATGAGGAGGATGATGCTGATGCTAATGATTACATCGAGTTTGAGGATGAGGATATTGATAAAATCTAA 438 0.5297 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGTKRLCHIRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMPDEARLLKAYGELPDSTRLNEGIGGGLDEEDDADANDYIEFEDEDIDKI* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1820 145 PANTHER EIF-1A 1 145 IPR001253 GO:0003743|GO:0006413
Lja3g1820 145 SMART eIF1neu4 28 110 IPR001253 GO:0003743|GO:0006413
Lja3g1820 145 MobiDBLite consensus disorder prediction 1 25 - -
Lja3g1820 145 CDD S1_IF1A 33 109 IPR001253 GO:0003743|GO:0006413
Lja3g1820 145 Gene3D - 2 145 IPR012340 -
Lja3g1820 145 Pfam Translation initiation factor 1A / IF-1 32 93 IPR006196 GO:0003723|GO:0003743|GO:0006413
Lja3g1820 145 TIGRFAM eIF-1A: translation initiation factor eIF-1A 14 110 IPR001253 GO:0003743|GO:0006413
Lja3g1820 145 ProSitePatterns Eukaryotic initiation factor 1A signature. 41 63 IPR018104 GO:0003743|GO:0006413
Lja3g1820 145 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1A 1 145 - -
Lja3g1820 145 SUPERFAMILY Nucleic acid-binding proteins 2 144 IPR012340 -
Lja3g1820 145 Hamap Translation initiation factor 1A [eif1a]. 16 110 IPR001253 GO:0003743|GO:0006413
Lja3g1820 145 ProSiteProfiles S1 domain IF1 type profile. 22 96 IPR006196 GO:0003723|GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1820 Lja-Chr3 20594627 20595435 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1820 1 145 Eukaryotic Initiation Factors Gene Family AT2G04520 88.966 2.84e-89 254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1820 3 20594627 20595435 Lja3g1820 3 20594627 20595435 ECH