Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1815 ATGGGAAACAGTGAAGACGAGACATCCATTAAGATTGAAAAGCCTTCTTCACCTCTAACACCTGAACAAATCAATCAGGCCAACCCGCCTAACTTTCATGTCTATCCTGATTGGGCTGCCATGCAGGCATATTATGGGCCGGGAGTCAATGTTCCAGCATACTTCAACCCAGCTGTTGCTTCTGGTCACACTCCTCCCCCATACATGTGGGGGCCACCACATCCTATGATGCCACCATATGGGCCACCTTATGCAGCATTCTATTCACATGGAGGGGTTTATACTCACCCTGCAGTGGCTATTGGGCCAAATTCACATGGTCAAGGAATTTCATCTTCACCTGCTGCTGGGACTCCTTCAAGCATGGAGACTCCAACCAAATTATCTGGAAATACTGATCAGGGTTTTATAAAGAAATTGAAGGGATTTGATGGGCTCGCGATGTCAATAGGCAATTGTAATGCTGAGAACGCTGAGCGCGGAGCTGAAAACAGGCTGTCACAGAGTGTGGATACTGATGGTTCCAGTGATGGAAGTGATGGCAATACTGCAGGGGCTACAAGGAAAAGAAGCTATGAAGGAACGCCTACTACTGATGGAGAAGGGAAAACTGAGATACAAGATAGTCCGGTTTCCAAGGAGACTACAGCTTCCAAGAAGACGCTGGCAGTTACCCCCATCAGGGTTGCTAGAAATTTAGTTGGACCTGTAGTTTCTTCAGGTATGACCACACCACCGGAACTGAGGAACCCTTCGACTGTTCATTCGAAGACATTTTCCACGAGTTCCCCACAACCTGGTGGAGTTTTGCCTCCAGAAACTTGGATGCAGAATGATCGTGAGCTAAAACGTGAAAGGAGAAAACAATCAAACCGTGAATCTGCTAGAAGATCCAGGCTGAGGAAACAGGCTGAGACTGAAGAATTGGCACGGAAAGTTGAAGCCTTGACCGCTGAGAATTTGTCACTTAAGTCAGACTTAAATGAATTGGCTGAAAGTTCTGAGAATTTGAGGGTGGAAAATGCTACATTAAGGGAAAAACTGAACAACACTCAACTGGGACAAACTGAAGAGATAATTTTGAACAGCATTGACAGCAAGAGGGCTACACCTATAAGTACAGAGAACTTACTATCAAGAGTTAATAATAATTCCAGTTCTAATGATAGATCAGCAGAGGAAGAGCATGATTTTTGTGAGCAAAAACCAAATTCTGGTGCAAAGCTGCATCAACTACTGGATACAAATCCTAGAGCTGATGCTGTTGCAGCTGGTTGA 1278 0.4507 MGNSEDETSIKIEKPSSPLTPEQINQANPPNFHVYPDWAAMQAYYGPGVNVPAYFNPAVASGHTPPPYMWGPPHPMMPPYGPPYAAFYSHGGVYTHPAVAIGPNSHGQGISSSPAAGTPSSMETPTKLSGNTDQGFIKKLKGFDGLAMSIGNCNAENAERGAENRLSQSVDTDGSSDGSDGNTAGATRKRSYEGTPTTDGEGKTEIQDSPVSKETTASKKTLAVTPIRVARNLVGPVVSSGMTTPPELRNPSTVHSKTFSTSSPQPGGVLPPETWMQNDRELKRERRKQSNRESARRSRLRKQAETEELARKVEALTAENLSLKSDLNELAESSENLRVENATLREKLNNTQLGQTEEIILNSIDSKRATPISTENLLSRVNNNSSSNDRSAEEEHDFCEQKPNSGAKLHQLLDTNPRADAVAAG* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1815 425 MobiDBLite consensus disorder prediction 1 30 - -
Lja3g1815 425 MobiDBLite consensus disorder prediction 237 268 - -
Lja3g1815 425 PANTHER G-BOX-BINDING FACTOR 3 1 425 - -
Lja3g1815 425 MobiDBLite consensus disorder prediction 379 425 - -
Lja3g1815 425 Gene3D - 282 335 - -
Lja3g1815 425 MobiDBLite consensus disorder prediction 159 219 - -
Lja3g1815 425 SMART brlzneu 279 343 IPR004827 GO:0003700|GO:0006355
Lja3g1815 425 Coils Coil 299 347 - -
Lja3g1815 425 Pfam G-box binding protein MFMR 1 99 IPR012900 -
Lja3g1815 425 CDD bZIP_plant_GBF1 284 332 IPR045314 GO:0003700|GO:0006355
Lja3g1815 425 MobiDBLite consensus disorder prediction 13 30 - -
Lja3g1815 425 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 281 344 IPR004827 GO:0003700|GO:0006355
Lja3g1815 425 MobiDBLite consensus disorder prediction 237 306 - -
Lja3g1815 425 MobiDBLite consensus disorder prediction 389 403 - -
Lja3g1815 425 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 425 IPR044827 GO:0003700|GO:0006355|GO:0043565
Lja3g1815 425 Pfam Disordered region downstream of MFMR 133 258 - -
Lja3g1815 425 MobiDBLite consensus disorder prediction 105 133 - -
Lja3g1815 425 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 286 301 IPR004827 GO:0003700|GO:0006355
Lja3g1815 425 SUPERFAMILY Leucine zipper domain 282 337 IPR046347 GO:0003700|GO:0006355
Lja3g1815 425 Pfam bZIP transcription factor 280 341 IPR004827 GO:0003700|GO:0006355
Lja3g1815 425 MobiDBLite consensus disorder prediction 277 306 - -
Lja3g1815 425 MobiDBLite consensus disorder prediction 161 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1815 Lja-Chr3 20554374 20560206 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1815 1 425 bZIP Transcription Factor Family AT2G46270 48.157 7.40e-107 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lja3g1815 MFMR_assoc 1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1815 K09060 - gmx:547789 588.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1815 3 20554374 20560206 Lja3g1815 3 20554374 20560206 ECH
Lja1g0118 1 1002203 1008901 Lja3g1815 3 20554374 20560206 PCT