Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1804 ATGAATACAGAGTCACACAAAACTCAAGACCAACACGAAAAACTAGAACAAGAACAAGAAGAAGAGGAAGAAGAAAACCGGTTACTACAATCCGAATGCGAGACAATCCCACTCTCCTCTCCCCTCTCATCACCATTAACCCCGGAGGATGGAGATGCAGAGGATTTCGTCTATGCGGACAAGGACAAGGTCCGGATATTCGACCTGGAGTCCGCCGCCGGAGGCGGCGGCTCCAGCTCCACGGCGGTGCCGCCGTTTTCTTGGAAGAAGCTGTGGCTGTTCACGGGGCCGGGGCTGCTGATGAGTGTGGCGTTCTTGGACCCTGGGAACCTGGAAGGGGACCTGCAGGCTGGTGCAATTGCAGGGTACTCGCTACTTTGGCTGTTGATGTGGTCGACCATCATGGGGCTATTGATACAGCTTCTGTCGGCGAGGCTTGGCGTGGCGACGGGGCGGCACCTGGCGGAGCTGTGCAGGGAGGAGTATTCCAATTGGGCTAGGTTGGTGCTGTGGTTCCTGGCTGAGGTGGCTCTCATTGCTGCTGATATTCAAGAGGTTATTGGCAGTGCTATTGCTATCAAGATTCTTAGCCATGGGGTTCTTCCCATTTGGGCTGGTGTGATCATCACAGCCTTTGATTGTTTCTTCTTTCTGTTTCTCGAGAATTATGGAGTGAGGAAGTTGGAAGGAGTTTTCGCGGTTTTCATCGGAACCATGGCCTTTTCTTTTGCATGGATGTTCTTTGATACAAAGCCAAGTGAAGAAGAACTTGTGATGGGTCTTTTGATCCCAAGAGTTAGCTCAAAGACACTTCGCCAGGCTGTGGAAATTGTGGGTTGTGTCATAACCCCACATAATGTATTCCTCCATTCTGCTTTGGTACAATCAAGGGACGTTGATATCCGTAACAAAAGCCAGGTTCAAGAGGCTCTGAATTACTACTCAATTGAGTCCTCAGCTGCACTTTTAGTCACCTTGGTGATCAATCTATGTGTGATAACTGTTTTTGCTCGGGTGTTCTATGGTACAGAACAGGCCAAGGGCATAGGATTAGTAAATGCAGGACAATATCTTGAGGAGAGGTATGGAGGAGGGTTGTTTCCAATTCTGTATATATGGGGTATTGGTTTGTTAGCAGCTGGACAAAGTAGCACCATCACTGGCACTTATGCTGGACAGTTTATAACAGAGGGATTTCTGAAGCTCAATATTAAGAAGTGGTTGAGGGCATTGATCACTAGAAGTTGTGCAATTGTTCCAACTATGATAGTGTCAATTGTTTTCAATACATCAGAAGGTTCATTGGATACCTTGAATGAATGGCTTAATGTGCTGCAATCAATACAGATTCCTTTTGCACTTATCCCCCTTCTTACTTTGGTGTCCAAGGAGGAGGTCATGGGGACTTTCAGAATAGGGCCTATAGTAGAGAGGGTGTCTTGGACTGTGGCTGTGCTGGTAATTGTGCTTTATGGATATATGTTATTAGATTTCTTCCTCTCTGAAGTGAAGGGACTGTTGTTTGGTTTTTTGGTCTGCCTTGGTGCTGCAGCCTGGATTGCATTTATTGTATATCTTGTTAACCATAGTGGTGCTGTTGCTTCTATGCTGGCGAGGTCCCCTAATTCCAAAGGCTTTTTTTGTCTTTCTGAAAACTAG 1659 0.4684 MNTESHKTQDQHEKLEQEQEEEEEENRLLQSECETIPLSSPLSSPLTPEDGDAEDFVYADKDKVRIFDLESAAGGGGSSSTAVPPFSWKKLWLFTGPGLLMSVAFLDPGNLEGDLQAGAIAGYSLLWLLMWSTIMGLLIQLLSARLGVATGRHLAELCREEYSNWARLVLWFLAEVALIAADIQEVIGSAIAIKILSHGVLPIWAGVIITAFDCFFFLFLENYGVRKLEGVFAVFIGTMAFSFAWMFFDTKPSEEELVMGLLIPRVSSKTLRQAVEIVGCVITPHNVFLHSALVQSRDVDIRNKSQVQEALNYYSIESSAALLVTLVINLCVITVFARVFYGTEQAKGIGLVNAGQYLEERYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFITEGFLKLNIKKWLRALITRSCAIVPTMIVSIVFNTSEGSLDTLNEWLNVLQSIQIPFALIPLLTLVSKEEVMGTFRIGPIVERVSWTVAVLVIVLYGYMLLDFFLSEVKGLLFGFLVCLGAAAWIAFIVYLVNHSGAVASMLARSPNSKGFFCLSEN* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1804 552 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 89 467 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja3g1804 552 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 47 551 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja3g1804 552 MobiDBLite consensus disorder prediction 1 15 - -
Lja3g1804 552 PANTHER METAL TRANSPORTER NRAMP3 PROTEIN 47 551 - -
Lja3g1804 552 Hamap Divalent metal cation transporter MntH [mntH]. 77 499 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja3g1804 552 Coils Coil 5 35 - -
Lja3g1804 552 MobiDBLite consensus disorder prediction 1 53 - -
Lja3g1804 552 PRINTS Natural resistance-associated macrophage protein signature 409 426 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja3g1804 552 PRINTS Natural resistance-associated macrophage protein signature 443 462 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja3g1804 552 PRINTS Natural resistance-associated macrophage protein signature 225 246 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja3g1804 552 PRINTS Natural resistance-associated macrophage protein signature 200 219 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja3g1804 552 PRINTS Natural resistance-associated macrophage protein signature 274 297 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja3g1804 552 PRINTS Natural resistance-associated macrophage protein signature 381 400 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja3g1804 552 PRINTS Natural resistance-associated macrophage protein signature 170 196 IPR001046 GO:0016020|GO:0030001|GO:0046873
Lja3g1804 552 MobiDBLite consensus disorder prediction 32 46 - -
Lja3g1804 552 Pfam Natural resistance-associated macrophage protein 112 473 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1804 Lja-Chr3 20382531 20385322 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1804 50 530 Inorganic Solute Cotransporters AT1G47240 73.389 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1804 K21398 - gmx:100801411 908.672