Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1798 ATGAATGCAAATGGTGGAAATGGGACTGAGGAGCGCAAGAGGAAACCTAATGATCCTTTTCTCAAGCCTGGGGGGAACCAAAGTATGCCAATTTCCCCAAGACTGGGCCCACCTATTTGGAAGGACTGGCCAGAGAGTTTGCCAATTGACAATGTGGTTGGTAATCAGGGTAATGGTTTAAGTAGATATATTACTTCAGTTGCTGGATCTGAACTTCCTAGTACTAGTTTTTGTTCCACCTCAGATTCTAAGCACATTGTTGATAAGTTAATTGTCAAGAATAATAAGAATCAGAATATAGCTTTTGTTAGCCACCCACAGAGTTCAAGACAGCCTCAAAGGAATCAATTAGCTATTGACTCTAAGTATAATAGCTTGAGTAGAGAAATTGCACCTAAGGTTGAAGAACAGTCACCACTCAGATTAAGCAAAGGACTCAAGGGAATTTATACTGAACTTCGGGGTCTGAAATCTCTGTCTAGCAGGAATGTGAATCATGACCCACAGAAAGTCTTTGCAAATATCAGCAATATAGATGAGACTTTCGCCTCAAGTAATGCACAACTAGTTAGCAGGATTAGGCAGAGTACTTCATCTACATATAATTATCCTCAATTGTTTGTGGAGAAAACAGTAAAGGGAAAGGAAGTTGTTTGCAAAGATTTAGACAAAAGCTTCAGTCTTGGAGGAGCACTTATGAGCCGGGAGGATGAGAAGACTTCTCTTGCAACTAAGTTTCAATCTGATACACTGCTGATATCAAATGATGACACTAACACGCCTTCCTTGCGAGGAACTACCGTTTCTGGTGCAGAAACTTTTAACAATGGAGTCAACTTGAGAGAGTGGCTTAAGTGTGAAGGTCAGAAGGTGAAGAAAACAGAAAGGCTACATTTATTTAAACAGATCTTGGAATTGGTTGATGTTGCACACTCGCAAAGAGTTTTGTTGCAAGACTTACGACCATCGTGTTTCACCTTATTGCCTTCGAGTAAAATTAAATACATTGGTTCATCACATCAACAAGAGTTGGTTAATAAAGCCATGACCTGCAATGTGACTGGGAAAAGGTCGCTGGAACTGGATATCCGTGCTTGCCAAAGTTTGAGTGCAAAGCAGCAAAAGCTTAGTGAGGAGACTGGATCGTTTAGGCAGCCCCACAACTTCGCCTTCATTCATGGTGGCAGAAGCAGAACTACAACTGTTCAAACTGGGTCTAACTTAAACAGGCTCGCTGAACCGAGGAGTAAAGAAAGTCTGTGCCAAGATGGTTCCAGTTGTCAACATACTTCTACTGAAGATGATAAGTTTGTGTCTGTAGCAATTCAATTAGAAAAGAAGTGGTATTGTAGTCCAGAAGTGCTCAATGATGGAGCTTGCACATTTTCATCAAATATTTATAGCCTAGGAGTTCTTCTTTTTGAGTTGCTGTGCAATATTGAGCCATATGAAGCGCATTCATCCGTGATGTTGGATTTGTGCCACAGAATTTTGCCACCAAAATTTCTGTCAGAAAATCCGAAGGAAGCTGGTTTTTGCCTTTGGCTTTTGCATCCTGAACCATCTTCTCGCCCCAATACCAGGACTATTTTAGAATCTGAATTTATACGTGAATTGGAGGAATCAAGTTCTGGAGATGATTTTGTAGTACCTGAAGAAGAAGTAGCAGAATCAGAGCAGTTAACATATTTTTTAATTTCACTTAAAGAAGAAAAGAAAAAGGAGGAAGCCAAATTGGCAGAAGAGCTTAGTTTCCTGGATGAAGATATTAAGGAGGTAGAAAGAAGTTATGCATACGGAATAGATTCAGCATTTCCTTTGGCACAAATGAACTATTCTGAATTGAGAGGAGCCAATTTACATTTTCAATATCCTTCCAGCTCAGATATTATTAGATCAGTTCCAAGGTCATTTGTTGATGAAGCGAGGTTTATGAGTCATATAAACCAGCTAGAGAATTCTTACTTCTCCATGAGATTCCAAGTCCTGAAGGAGGCATCTGCTATTGCAAACAGTGAAAAAAATGTGATAGAAAGTAGATGGAGATTTCCTTACATAGGGAATGCTAGTAAGGAGCCAAGAACAGTTCAGAGTTCTGTCAGTTCTCTCGGATCATTCTTTGAAGGTATATGCAAGTTTGCTCGTTATAGCAAGTTCGAAGAGCGTGGAACATTAAGAAATAAAGACCTTCTTAGTTCTGCCAATGTAATATGTGCTTTAAGTTTCGACCGTGATGAGGATTACATTGCAGCAGGTGGAGTTTCAAAGAAAATTAAGATTTTTGACCTCAATTCTATCTCTGATGATTCTATAGACATCCAGTGCCCTGTTGTTGAGATGTCGAATAAATCAAAGCTTAGCTGCGTTTGTTGGAACAGTTATATAAAAAATCATCTGGCTTCTACTGATTATGATGGTGTAGTTCAGATGTGGGATGCAAGCAGTGGTCAACCATTGTCTCAATACATGGAGCACCAAAAGAGAGCTTGGTCTGTTCACTTTTCTCTGTCTGACCCGAAAATGTTTGCTAGCGGAAGCGATGATTGTTCTGTCAAACTGTGGAATATCAGCGAGAAAAATTCTCTAGGAACCATTTGGAGCCCTGCAAATGTATGTTGTGTTCAGTTCTCTGCTTACTCAACACATCTTTTATTTTTTGGATCAGCTGATTACAAGGTGTATGGTTACGATCTTCGTCACACCAGAACACCTTGGTGCACATTTTCTGGTCATGGAAAAGCTGTTAGCTATGTAAAATTTCTAGATGCTGAAACAGTTGTCTCTGCTTCCACTGACAACACTTTGAAGCTCTGGGACATGAAGAAAACCAGCTCTTCTGGGTTGTCATCTGATGCTTGTGACATAACCTTTAAAGGTCATAGTAATGAGAAGAATTTTGTAGGTTTATCTGTTTTGGATGGATATATTGCATGTGGCTCAGAGTCTAATGAGGTTTTCTGTTACCACAAATCTCTGCCAGTGCCAATTGCTTCTCACAAATTTGAGTCAATGGATCCCATTTCTGGTCATTCAAATAGTGGCGATAACACTGGACAGTTTGTTTCTAGTGTCTGCTGGAGAAAGAAGTCTAACATGCTAGTTGCTGCCAACTCAGTGGGAATTGTGAAACTATTGCAGATGGTCTGA 3147 0.3988 MNANGGNGTEERKRKPNDPFLKPGGNQSMPISPRLGPPIWKDWPESLPIDNVVGNQGNGLSRYITSVAGSELPSTSFCSTSDSKHIVDKLIVKNNKNQNIAFVSHPQSSRQPQRNQLAIDSKYNSLSREIAPKVEEQSPLRLSKGLKGIYTELRGLKSLSSRNVNHDPQKVFANISNIDETFASSNAQLVSRIRQSTSSTYNYPQLFVEKTVKGKEVVCKDLDKSFSLGGALMSREDEKTSLATKFQSDTLLISNDDTNTPSLRGTTVSGAETFNNGVNLREWLKCEGQKVKKTERLHLFKQILELVDVAHSQRVLLQDLRPSCFTLLPSSKIKYIGSSHQQELVNKAMTCNVTGKRSLELDIRACQSLSAKQQKLSEETGSFRQPHNFAFIHGGRSRTTTVQTGSNLNRLAEPRSKESLCQDGSSCQHTSTEDDKFVSVAIQLEKKWYCSPEVLNDGACTFSSNIYSLGVLLFELLCNIEPYEAHSSVMLDLCHRILPPKFLSENPKEAGFCLWLLHPEPSSRPNTRTILESEFIRELEESSSGDDFVVPEEEVAESEQLTYFLISLKEEKKKEEAKLAEELSFLDEDIKEVERSYAYGIDSAFPLAQMNYSELRGANLHFQYPSSSDIIRSVPRSFVDEARFMSHINQLENSYFSMRFQVLKEASAIANSEKNVIESRWRFPYIGNASKEPRTVQSSVSSLGSFFEGICKFARYSKFEERGTLRNKDLLSSANVICALSFDRDEDYIAAGGVSKKIKIFDLNSISDDSIDIQCPVVEMSNKSKLSCVCWNSYIKNHLASTDYDGVVQMWDASSGQPLSQYMEHQKRAWSVHFSLSDPKMFASGSDDCSVKLWNISEKNSLGTIWSPANVCCVQFSAYSTHLLFFGSADYKVYGYDLRHTRTPWCTFSGHGKAVSYVKFLDAETVVSASTDNTLKLWDMKKTSSSGLSSDACDITFKGHSNEKNFVGLSVLDGYIACGSESNEVFCYHKSLPVPIASHKFESMDPISGHSNSGDNTGQFVSSVCWRKKSNMLVAANSVGIVKLLQMV* 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1798 1048 ProSiteProfiles Trp-Asp (WD) repeats profile. 908 948 IPR001680 GO:0005515
Lja3g1798 1048 Pfam WD domain, G-beta repeat 737 762 IPR001680 GO:0005515
Lja3g1798 1048 Pfam WD domain, G-beta repeat 907 939 IPR001680 GO:0005515
Lja3g1798 1048 Pfam WD domain, G-beta repeat 817 855 IPR001680 GO:0005515
Lja3g1798 1048 PANTHER LIGASE COP1, PUTATIVE-RELATED 2 1048 - -
Lja3g1798 1048 PRINTS G protein beta WD-40 repeat signature 842 856 IPR020472 -
Lja3g1798 1048 PRINTS G protein beta WD-40 repeat signature 799 813 IPR020472 -
Lja3g1798 1048 PRINTS G protein beta WD-40 repeat signature 926 940 IPR020472 -
Lja3g1798 1048 PANTHER PROTEIN SPA1-RELATED 2 2 1048 IPR044630 GO:0009640
Lja3g1798 1048 SMART WD40_4 727 762 IPR001680 GO:0005515
Lja3g1798 1048 SMART WD40_4 950 989 IPR001680 GO:0005515
Lja3g1798 1048 SMART WD40_4 858 897 IPR001680 GO:0005515
Lja3g1798 1048 SMART WD40_4 773 812 IPR001680 GO:0005515
Lja3g1798 1048 SMART WD40_4 815 855 IPR001680 GO:0005515
Lja3g1798 1048 SMART WD40_4 901 939 IPR001680 GO:0005515
Lja3g1798 1048 SMART WD40_4 1000 1046 IPR001680 GO:0005515
Lja3g1798 1048 SMART serkin_6 190 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1798 1048 ProSiteProfiles Trp-Asp (WD) repeats profile. 779 821 IPR001680 GO:0005515
Lja3g1798 1048 ProSiteProfiles Trp-Asp (WD) repeats profile. 822 864 IPR001680 GO:0005515
Lja3g1798 1048 SUPERFAMILY Protein kinase-like (PK-like) 275 540 IPR011009 -
Lja3g1798 1048 SUPERFAMILY WD40 repeat-like 734 1044 IPR036322 GO:0005515
Lja3g1798 1048 ProSitePatterns Trp-Asp (WD) repeats signature. 926 940 IPR019775 -
Lja3g1798 1048 ProSiteProfiles Protein kinase domain profile. 176 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1798 1048 Coils Coil 569 596 - -
Lja3g1798 1048 MobiDBLite consensus disorder prediction 1 32 - -
Lja3g1798 1048 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 908 941 - -
Lja3g1798 1048 Gene3D Transferase(Phosphotransferase) domain 1 266 581 - -
Lja3g1798 1048 Pfam Protein kinase domain 445 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1798 1048 ProSitePatterns Trp-Asp (WD) repeats signature. 799 813 IPR019775 -
Lja3g1798 1048 Gene3D - 706 1048 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1798 Lja-Chr3 20297670 20304012 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1798 819 988 Miscellaneous Gene Families AT5G08390 25.000 4.15e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Lja3g1798 Pkinase 1.8e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1798 K16240 - gmx:100802144 1472.6