Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1789 ATGGAAGAGAACATGAAGTGTGAACAAGTTGGTTTGATTGGTGAGCTAATGCAAGGGAAGGAGCTAACAAAGCAGCTTTGTGACCATCTGATTTCATCATCATCATCATCCAATGTAACTAATGAAGTCTTAATTGAGAAAATACTTTTCTCCTATGAGAAAGCACTCACCATGCTGAACTGGAAGGCTAATGTGGAGGACAGTAAGATGAGCAATGGTACCATGATGGATTCTCATTGTTCTTATGATGGGAGCCCCAGAAGTGAGGTCCTGGACCCAGAGGTTAAGCACAAAAATGTTTTCAAGAAAAGAAAGACCATGCCTAAGTGGACAAGCCAAGTGAGGGTTTGCTCAGGAACAGCTATTGAGGGGTCTCTGGATGATGGTTATAGCTGGAGAAAATATGGACAGAAGGATATTCTTGGAGCTAAGTTTCCAAGAGGATATTACAGATGCACTCACAGAAATGTGCAAGGGTGTCAGGCTACTAAGCAAGTGCAAAAGTCAGATAAAGACCCAACTATGTATGAGATAAACTACAGAGGAAAACACACTTGCACCCAAGCTAGTCATGCAAACAAGGCATCCCCATCAACAAAAGTAAAGGTGGGCTTGGGAGAAAATAAGCACCATATTCTAACCCATCAAAAGAACCAACCACAACAAGAGAAAACAGAACAAACCCAAGAGAGAGTTTTGTCTTTTGGATCAGAACTTGAACTCAAAATTGAGGACTTGGACTACAAGGAGGACACATTCCCATCATTTTGCTTTTCTTCTCCATCAATAGGATCTGAACAAGAGGACAACAACATATTCTCTGAAAACAATTTCATTGAAAGCTTTTCTCCTCCATACATATCTCCTGCTACATCAGAACTAGTCTTGCATACCTCAGATTTTGATGTCACAGAGATTATTTCAACCCCAACCTCAGTTACCAATTATGAAATGATAGATTTAGATCTCTTCCTTGACAACATGGATTTCGACACGGTTTTCCCAATCAACACCACAGAACTTTGCTCTTGA 1032 0.405 MEENMKCEQVGLIGELMQGKELTKQLCDHLISSSSSSNVTNEVLIEKILFSYEKALTMLNWKANVEDSKMSNGTMMDSHCSYDGSPRSEVLDPEVKHKNVFKKRKTMPKWTSQVRVCSGTAIEGSLDDGYSWRKYGQKDILGAKFPRGYYRCTHRNVQGCQATKQVQKSDKDPTMYEINYRGKHTCTQASHANKASPSTKVKVGLGENKHHILTHQKNQPQQEKTEQTQERVLSFGSELELKIEDLDYKEDTFPSFCFSSPSIGSEQEDNNIFSENNFIESFSPPYISPATSELVLHTSDFDVTEIISTPTSVTNYEMIDLDLFLDNMDFDTVFPINTTELCS* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1789 343 Gene3D WRKY domain 112 189 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja3g1789 343 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 340 IPR044810 GO:0003700
Lja3g1789 343 PANTHER WRKY TRANSCRIPTION FACTOR 46-RELATED 1 340 - -
Lja3g1789 343 Pfam WRKY DNA -binding domain 127 186 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja3g1789 343 SUPERFAMILY WRKY DNA-binding domain 125 188 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja3g1789 343 ProSiteProfiles WRKY domain profile. 121 184 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja3g1789 343 SMART WRKY_cls 126 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1789 Lja-Chr3 20176710 20180008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1789 5 320 WRKY Transcription Factor Family AT2G46400 35.962 2.18e-50 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja3g1789 WRKY 5.1e-26 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1789 3 20176710 20180008 Lja1g4885 1 66890087 66892601 ECH
Lja3g1789 3 20176710 20180008 Lja3g1789 3 20176710 20180008 ECH
Lja3g1789 3 20176710 20180008 Lja1g0100 1 813034 814470 ECH
Lja4g0348 4 2800493 2801898 Lja3g1789 3 20176710 20180008 ECH
Lja1g0100 1 813034 814470 Lja3g1789 3 20176710 20180008 PCT