Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1783 ATGCCTACAAAGCTGCTCCTCTTATCCCAACTCCGTGTCCTCCAACCCATGAAGAATCCTCTCTTCTCCCGAACCTTCCTCACCCCTTTCAAATTCTCCCACCTCTACCTCCGCAACGCAGCGTTTAACCCCCGCCCCTTCTCCGCCCGCGCCGCCGGTAGCAGCAGGGAGCAGCTCCGCCCTTCCAAGAGCAAGAGCCTCGTCGATGACGAGGCCGAGCTCAGCGACTGGGTCGATGAGCTCCGCACTGGTCGGACCGACTCCTTCGCCCCCCGGAGGGTCAGCGAGGATGGTGGTGTGGAACGGCGTGAGTTTGCGCCGAGGGGGAATACCAGGGCGCCGAAGAGGAAGGGTGAGGATTTGAGGAGAGGGAGGCAGAATGGTGGTAACGCCAGGAGGAAGTTTGCGTTGAGTGGGGATGATGAGGATAAGGATGACGTGGCGGGGAGGAAGTTCAAGGTTGGTGGTGGTGGTAGCATTGGGCAGTTTCTCAGTGATGAAGAAGATGATGATGAAGATGAGGATGAGGAAGATGAAGTGAGTGAGGATGAGGGGATATTGAACAAGAGTAGAACTGCTTTGTTTGCTCAGAAGAAGAGTGCTGTGCCTGTACCAACTCCAAGACCTTCTTCATCTTCTGGGTCTGGGTCTGATTCTTATTTGAGTGAAACCAGATTTGACCAATGTTCGGTCTCCCCGCTGTCACTGAAAGGAGTCAAGGATGCTGGGTATGAGAAAATGACTGTGGTGCAGGAGGCAACTCTTCCCATAATTCTTAAAGGTAAGGATGTGCTTGCCAAGGCTAAAACAGGAACAGGAAAAACAGTAGCCTTTTTGCTTCCATCAATTGAAGTTGTTGTGAAGTCACCTGCAAGTGATCGTGATCAAAGGAGGCCACCAATTCTTGTGCTTATCATATGCCCAACTCGGGAGCTTGCATCCCAAGCTGCTGCAGAAGCCAATAAACTGATTAAGTATCATCCGGCCATTGGTGTTCAAGTTGTGATTGGAGGAACAAGACTTGCTTTAGAACAGAAACGCATGCAAGTAAACCCTTGCCAGATCCTTGTTGCTACACCTGGAAGGCTTAGGGATCATGTTGAGAATACTGCTGGTTTTGCATCTAGGCTTATGGGTGTTAAGGTCTTGATTCTTGATGAAGCTGATCATTTACTAGACATGGGATTTCGTAAAGATATTGAGAAAATAATTGCTGCTGTCCCTAAACAACGACAAACCCTTCTGTTTTCTGCCACCGTTCCTGAAGAGGTGCGTCAAGTCTGTAATATTGCTTTGAGAAGGGATCATGAATTTATTAATACAGTTCAAGAGGGTAGTGAGGAGACACATTCACAGGTCCGCCAGATGCATTTAGTTGCCCCTTTAGACAAGCATTTCTCTTTACTCTATGCTATTCTGAAGGATCACATTGCAGATGATGTTGACTATAAGGTTCTTGTTTTCTGCACAACTGCTATGGTCACACGACTTGTTGCTGATCTTCTCAGTGAATTGAAATTGAATGTGAGAGAAATCCATTCAAGAAAGCCTCAGAGTTATAGAACCAGAGTCTCTGAGGAATTTCGGAAGTCAAAGGGTCTCATCCTTGTTACTTCAGATGTCTCTGCACGTGGTGTAGATTATCCAGATGTTACACTTGTTGTACAGGTTGGTTTACCATCTGATAGAGAACAGTATATACATCGACTCGGAAGAACAGGGCGAAGAGGGAAAGAAGGGCAAGGCATACTGCTACTGACTCCTTGGGAAGAGTTCTTTTTATCTACCATAAAAGATTTGCCTATTGAGAAAGCTCCAGTACCTTCAGTTGATCCTGACACTAAGAGAAAGGTGGAAAAGGCTCTATCGCATGTAGAGATGAAGAATAAAGAAGCAGCATATCAGGCATGGCTTGGTTACTACAATTCCAACAAGAAAATTGGGAAAGACAAGTATAGGCTAGTGGAGCTTGCAAATGAGTTCAGTAAAAGCATGGGGCTTGATAACCCTCCAGCTATTCCTAAACTCGTTCTTGGTAAGATGGGTCTTAGAAATATCCCTGGTTTACGTTCCAAGTAG 2079 0.468 MPTKLLLLSQLRVLQPMKNPLFSRTFLTPFKFSHLYLRNAAFNPRPFSARAAGSSREQLRPSKSKSLVDDEAELSDWVDELRTGRTDSFAPRRVSEDGGVERREFAPRGNTRAPKRKGEDLRRGRQNGGNARRKFALSGDDEDKDDVAGRKFKVGGGGSIGQFLSDEEDDDEDEDEEDEVSEDEGILNKSRTALFAQKKSAVPVPTPRPSSSSGSGSDSYLSETRFDQCSVSPLSLKGVKDAGYEKMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPASDRDQRRPPILVLIICPTRELASQAAAEANKLIKYHPAIGVQVVIGGTRLALEQKRMQVNPCQILVATPGRLRDHVENTAGFASRLMGVKVLILDEADHLLDMGFRKDIEKIIAAVPKQRQTLLFSATVPEEVRQVCNIALRRDHEFINTVQEGSEETHSQVRQMHLVAPLDKHFSLLYAILKDHIADDVDYKVLVFCTTAMVTRLVADLLSELKLNVREIHSRKPQSYRTRVSEEFRKSKGLILVTSDVSARGVDYPDVTLVVQVGLPSDREQYIHRLGRTGRRGKEGQGILLLTPWEEFFLSTIKDLPIEKAPVPSVDPDTKRKVEKALSHVEMKNKEAAYQAWLGYYNSNKKIGKDKYRLVELANEFSKSMGLDNPPAIPKLVLGKMGLRNIPGLRSK* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1783 692 CDD SF2_C_DEAD 453 586 - -
Lja3g1783 692 PANTHER RNA HELICASE 185 690 - -
Lja3g1783 692 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 31 122 - -
Lja3g1783 692 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 301 595 IPR027417 -
Lja3g1783 692 MobiDBLite consensus disorder prediction 89 221 - -
Lja3g1783 692 SMART ultradead3 243 456 IPR014001 -
Lja3g1783 692 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 255 438 IPR014001 -
Lja3g1783 692 MobiDBLite consensus disorder prediction 164 183 - -
Lja3g1783 692 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 224 252 IPR014014 GO:0003724
Lja3g1783 692 Pfam DEAD/DEAH box helicase 249 426 IPR011545 GO:0003676|GO:0005524
Lja3g1783 692 MobiDBLite consensus disorder prediction 135 151 - -
Lja3g1783 692 SMART helicmild6 496 577 IPR001650 -
Lja3g1783 692 Gene3D - 200 440 IPR027417 -
Lja3g1783 692 MobiDBLite consensus disorder prediction 204 221 - -
Lja3g1783 692 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 185 690 - -
Lja3g1783 692 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 473 619 IPR001650 -
Lja3g1783 692 MobiDBLite consensus disorder prediction 89 127 - -
Lja3g1783 692 Pfam Helicase conserved C-terminal domain 469 577 IPR001650 -
Lja3g1783 692 Gene3D - 447 671 IPR027417 -
Lja3g1783 692 CDD DEADc_MSS116 231 440 - -
Lja3g1783 692 PANTHER RNA HELICASE 31 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1783 Lja-Chr3 20105490 20110755 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1783 224 605 Eukaryotic Initiation Factors Gene Family AT3G19760 28.141 2.58e-47 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1783 - - gmx:100795739 991.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1783 3 20105490 20110755 Lja3g1783 3 20105490 20110755 ECH