Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1781 ATGGGATACATATCACAACTATCAACACACTCAAACATGAAATTTGCCAAGTCAGATGAGAATGGAGAATCACTTTTGTGTTCTTATGCTTCCTGGCTAGAAAACCATCCTTCTGCTTTGGACAATTTTGAGGAACTGATGAGCATTGCCAAAGGGAAACAGATTGTTGTGTTTTTGGATTATGACGGAACACTCTCGCCGATTGTAGATGACCCTGATCAGGCTTACATGAGTGATGCTATGCGTGCTGCTGTTCGTGAAATTGCTAGTTGTTTTCCCACTGCCATTGTTAGTGGAAGGCGCAGGAATAAGGTGTATGAATTTGTGAAGTTAAGGAATGTCTATTATGCTGGAAGTCATGGTATGGATATATCAACCCCTTTAGGCTCTGCAAAATATGATGATCAGAAGCATCACACAAAGGCTATTGGAGAAAAGGGAGATCAAGTTGTTCTTTTTCATCCAGCAAAAGAATTTCTGCCAACAATCCAAGAGATAATTCAGCTTTTGAAAGAAAATACTACAAGAATCAAAGGCTCTACGGTTGAGGATAACATGTTCTGTATATCTGTACATTACCGGCGTGTGAAAAATGAAGAGGATGTTGGAGTTCTCAGAGAAATTGTGGAGTCTGTAATGAAAGATTACCCCAATTTTCACATATCTAGAGGAAGAAAGGTTATGGAGATACGCCCAAATGTAAACTGGGATAAAGGCCATGCATTGATGTATTTGCTTGACACTCTTGGATTTGAGAGCTTTAATGATGTTCTACCAATTTACCTTGGAGATGACAAAACAGATGAAGATGCTTTTAAGGTTATAAGACACATTGGAAGAGGATTTCCCATCATTGTTTCTTCAATTGCCAAGGAGACCAAGGCTTCATATTCTCTGCGTGACCCTGCTGATGTGATGACATTCTTGATACGTTTAGCAAAATGGAAGAACATGTTACAGAAAACTAAATAG 972 0.3899 MGYISQLSTHSNMKFAKSDENGESLLCSYASWLENHPSALDNFEELMSIAKGKQIVVFLDYDGTLSPIVDDPDQAYMSDAMRAAVREIASCFPTAIVSGRRRNKVYEFVKLRNVYYAGSHGMDISTPLGSAKYDDQKHHTKAIGEKGDQVVLFHPAKEFLPTIQEIIQLLKENTTRIKGSTVEDNMFCISVHYRRVKNEEDVGVLREIVESVMKDYPNFHISRGRKVMEIRPNVNWDKGHALMYLLDTLGFESFNDVLPIYLGDDKTDEDAFKVIRHIGRGFPIIVSSIAKETKASYSLRDPADVMTFLIRLAKWKNMLQKTK* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1781 323 Pfam Trehalose-phosphatase 58 302 IPR003337 GO:0003824|GO:0005992
Lja3g1781 323 TIGRFAM T6PP: trehalose-phosphatase 53 313 IPR003337 GO:0003824|GO:0005992
Lja3g1781 323 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 16 322 IPR044651 GO:0004805|GO:0005992
Lja3g1781 323 SUPERFAMILY HAD-like 56 315 IPR036412 -
Lja3g1781 323 Gene3D - 55 147 IPR023214 -
Lja3g1781 323 Gene3D - 180 323 IPR023214 -
Lja3g1781 323 CDD HAD_TPP 56 306 - -
Lja3g1781 323 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 16 322 - -
Lja3g1781 323 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 57 279 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1781 Lja-Chr3 20040283 20042558 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1781 51 309 Trehalose Biosynthesis Gene Families AT1G70290 24.088 1.76e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1781 K01087 - gmx:100799466 477.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1781 3 20040283 20042558 Lja3g1781 3 20040283 20042558 ECH