Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1778 ATGTCTTCAAAGGGACAGAAATTTGTGAGGTTTGAAGATTGGAGGTCAGAGTCATCTCTAAGTATTGAGCAGAAAGATTCTACTAGTGATGGATTTCTTAAAAGAAAAGTTAAATCAAGTCCAGTAAATGATGGTTCAACAGAAAAACTGGCTTCTAGGTGCAAGGTGCTTGATCCACAAGGTTCACTACTTCAGAAATGGAACAAAATTTTTGTAATAACCTGTGTGATGGCAATCTCTGTGGACCCTTTGTTCTTTTACATCCCTGTGATTGATGACAAGAGGAAGTGCCTTGATTTGGATGGAGCACTGAAGATTACTGCTGGTGTTTTTCGCACGTTCTTTGATCTTTTCTACATTCTTCGCATCATCTTTCAGTTTCGAACCGGGTTCATTGCCCCTTCTTCACGTGTATTTGGAAGGGGTGAGCTGGTTGATGATCCTCGAGCCATAGTGATGAGATACTTGAGTTCTCACTTCATCATTGACATTCTATCAATTATTCCACTTCCTCAGATGGTCATTTTAGCTCTTATTCCAATCCCAAAATGCTCAGCTCCATATCTGGAAAAGGATTTGTTGAAGTATACAGTAATAGCTCAGTATATACCAAGACTTTTGAGGATCTATCCACTGTTCAAAGAAGTAACAAGCACTTCTGGCATATTGACTGAGACAGCCTGGGCTGGAGCTGCTTATAATCTTTTTCTCTATATGCTGGGAAGTCATGTTGTTGGAGCTTTCTGGTATCTGTTTTCAGTGGAATCAGAGGTGCGGTGCTGGCGCCGGCTCTTGAAGAATACTACATACTCTCATGATTCCTACCTGAGCTGTGGACAAGGCAATCCCATTGTTCTATCGCTTCTCAATAGCTCTACTTCTTGCCCTTACATTGATCCTGATGACATTGAAGACCCAACAGTTTACAATTTTGGGATATTTATAGAAGCTCTAAAGTCTCGCGTGGTGGAGTCGACTGCTGACTTTCATCAGAAGTTCTTCTACTGCTTTTGGTGGGGTTTGAGAAATGTAAGCTCTGTTGGGCAAAACCTCAAGACAAGTACTTATGTTGGAGAGATATTCTTTGCTATCTTCATTGCCACCTTTGGATTGGTGCTATTTGCACTACTTATTGGAAACATGCAGAAATTTCTACAATCTACAACTGTTAGAGTTGAAGAGATGAGAATCAAAAGGCGGGACGCAGAACAGTGGATGTGCCACCGTATGCTACCTGACTTCTTGAAGGAAAGAATTAGAAGGTATGAACAATACAAATGGCAAGAAAATAGAGGTGTTGAAGAGGAGACGTTAATTCGCAACCTCCCCAAAGATCTTAGAAGGGACATCAGGCGTCATCTTTGCTTAGATTTACTTAAAAAAGTGCCAATGTTTGAGAACATGGATAACCAATTGTTGGATGCAATGTGTGATAGACTAAAGCCAGTCCTTTACACAGAGAAAAGTTCCATAGTTCGTGAAGGAGATCCAGTTGATGAAATGCTCTTCATTATGCGTGGAAAAATTGCTACTGCCACAACAAATGGTGGAAGAACTGGTTTCTTCAACTCCTCTGTACTAAAGGCCGGTGACTTCTGTGGAGAAGAGCTTCTAACATGGGCCTTGGATCCAAACACCTCCTCAAACCTACCCATTTCAACTAGAACAGTGGAAACTATTTCAGAAGTTGAAGCCTTTGCTCTCATGCCTGATGACTTGAAGTTTGTTACTTCCCAATTTCGACGCCTTATAAACAGCAACCAACTCCAGCACACTTTCAGGTTCTACTCCTTACAATGGAGGACATGGGCTGCCTGTTTCATACAAGCAGCTTGGCGTAGATGCAGGAAAAAGAAGACTGAGAGGTTATTACGTGAAGCAGAAGAAAGGCTAGATGGTTTTGAGAGTGAGGCAGGGTCCTCACCAAGCTTTGTATCCACCGTATTTGCATCAAGGTTTGTATCGAATGTGCGGCCCATGCAAAGTGGCAAACGCATGCGCAACAAAATGCCACAGACACAGAGACTACTACCCTTGCTGCCTCAGAAGCCATCTGATTTCACTGCACAAAAAGACTAG 2079 0.4209 MSSKGQKFVRFEDWRSESSLSIEQKDSTSDGFLKRKVKSSPVNDGSTEKLASRCKVLDPQGSLLQKWNKIFVITCVMAISVDPLFFYIPVIDDKRKCLDLDGALKITAGVFRTFFDLFYILRIIFQFRTGFIAPSSRVFGRGELVDDPRAIVMRYLSSHFIIDILSIIPLPQMVILALIPIPKCSAPYLEKDLLKYTVIAQYIPRLLRIYPLFKEVTSTSGILTETAWAGAAYNLFLYMLGSHVVGAFWYLFSVESEVRCWRRLLKNTTYSHDSYLSCGQGNPIVLSLLNSSTSCPYIDPDDIEDPTVYNFGIFIEALKSRVVESTADFHQKFFYCFWWGLRNVSSVGQNLKTSTYVGEIFFAIFIATFGLVLFALLIGNMQKFLQSTTVRVEEMRIKRRDAEQWMCHRMLPDFLKERIRRYEQYKWQENRGVEEETLIRNLPKDLRRDIRRHLCLDLLKKVPMFENMDNQLLDAMCDRLKPVLYTEKSSIVREGDPVDEMLFIMRGKIATATTNGGRTGFFNSSVLKAGDFCGEELLTWALDPNTSSNLPISTRTVETISEVEAFALMPDDLKFVTSQFRRLINSNQLQHTFRFYSLQWRTWAACFIQAAWRRCRKKKTERLLREAEERLDGFESEAGSSPSFVSTVFASRFVSNVRPMQSGKRMRNKMPQTQRLLPLLPQKPSDFTAQKD* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1778 692 Gene3D - 69 388 - -
Lja3g1778 692 SMART cnmp_10 464 595 IPR000595 -
Lja3g1778 692 Pfam Ion transport protein 67 392 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lja3g1778 692 Gene3D Jelly Rolls 462 582 IPR014710 -
Lja3g1778 692 Gene3D Helix hairpin bin 391 455 - -
Lja3g1778 692 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 7 690 - -
Lja3g1778 692 SUPERFAMILY Voltage-gated potassium channels 58 386 - -
Lja3g1778 692 Coils Coil 617 637 - -
Lja3g1778 692 SUPERFAMILY cAMP-binding domain-like 393 580 IPR018490 -
Lja3g1778 692 ProSiteProfiles cAMP/cGMP binding motif profile. 464 548 IPR000595 -
Lja3g1778 692 CDD CAP_ED 464 596 IPR000595 -
Lja3g1778 692 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 7 690 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1778 Lja-Chr3 19970481 19975224 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1778 1 686 Ion Channels AT5G53130 61.613 0.0 858
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1778 K05391 - gmx:100795201 1102.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1778 3 19970481 19975224 Lja3g1778 3 19970481 19975224 ECH
Lja1g0094 1 768239 772354 Lja3g1778 3 19970481 19975224 PCT