Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1776 ATGGCCATCTTGAAGGTCCTTTTTCTCTTTATCTTTCCTGTCATATACGCCACAAATGATTGCCGATTTTCTTTATGTGGTAACAATAGTATCCTCATTCGTTTCCCCTTTCAACTAGAAGGTGAGCAACCTCCTTACTGTGGCTATCCTGGTTTCAACTTATTCTGTACCAATGATAGCAAAACAGTTCTAAAATTTCCATACTCTGGGGAGTTCCATGTTCGCAACATAAACTATCTCATACAAGCGATACAAGTCTACGACCCGGATTATTGCCTTCCCAAACGTCTTCTGAGCCTCAACTTTTCAGGTTCTCCCTTCACTGCTACTTATAATCGTAACTACACCTTCATAAGCTGCCCAAATCAGAGCGCAGGGTTGCCATTCATTCCCATTGACTGCCTCAGTAATTCCACAACCTTTGTATTTGCCATCCCTTCGGTCAACCTGGCTAATTCGATGCTTGAGTCTTGCTATGTTATTAAAAGGCTTTCAATTCCGGTTACAAGGTCGAGACGGTATCAGGAAAATCTCAGAGATGACCTTAATGCAGATCTTCTATTAACATGGGATATACCTAACTGTGGATATTGTGAATCACAAGAGCTATTGTGTGGATTTGCAAGCACTAGCAGCAAACAAGTAGTCTGTTTGTCTAATGGTCAAACAGGTAGCTCCCAAAAAGGACTTCGAATTTTCAGAGTCATGGCACTATGCATAGCTGCACCAGCTGTTCTCTTTGCAATTTTGATGGCAAGCTGTGTGTGCTACACTGACAGAATAGCTCCCAGAAGGAATGCTGTGGCTGCTACAACAGATCATGAAATTTCACAACCTGCAGAGGCCGCAGAAGGTGTTATGGGTCTGGATGAGTCTACTATTGAGTCTTATGAGAAGGTGGTGCTTGGGGAGAGTCGAAGGGTGCCGGGGCCGAACAGCGGATGTTGCTGGATATGCTTGGCAGAGTACAGCAGTAAAGAGACAGTGAGATGCATTCCTGAATGTAAACACTGTTTCCATGCTGACTGCATTGATGAGTGGCTTCGCATCAACACCACATGCCCTGTTTGCCGCAACTCTCCATCCCCTTCTCCTCTTCATGCTGCTACATCCGCTGACCCTTGA 1125 0.4462 MAILKVLFLFIFPVIYATNDCRFSLCGNNSILIRFPFQLEGEQPPYCGYPGFNLFCTNDSKTVLKFPYSGEFHVRNINYLIQAIQVYDPDYCLPKRLLSLNFSGSPFTATYNRNYTFISCPNQSAGLPFIPIDCLSNSTTFVFAIPSVNLANSMLESCYVIKRLSIPVTRSRRYQENLRDDLNADLLLTWDIPNCGYCESQELLCGFASTSSKQVVCLSNGQTGSSQKGLRIFRVMALCIAAPAVLFAILMASCVCYTDRIAPRRNAVAATTDHEISQPAEAAEGVMGLDESTIESYEKVVLGESRRVPGPNSGCCWICLAEYSSKETVRCIPECKHCFHADCIDEWLRINTTCPVCRNSPSPSPLHAATSADP* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1776 374 PANTHER RING-H2 FINGER PROTEIN ATL21A-RELATED 5 368 - -
Lja3g1776 374 SMART ring_2 316 357 IPR001841 -
Lja3g1776 374 SUPERFAMILY RING/U-box 315 361 - -
Lja3g1776 374 ProSiteProfiles Zinc finger RING-type profile. 316 358 IPR001841 -
Lja3g1776 374 Pfam Wall-associated receptor kinase galacturonan-binding 21 88 IPR025287 GO:0030247
Lja3g1776 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 363 IPR013083 -
Lja3g1776 374 Pfam Ring finger domain 316 358 IPR001841 -
Lja3g1776 374 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1776 Lja-Chr3 19960264 19962496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1776 19 364 C3H Transcription Factor Family AT2G46495 46.067 1.86e-94 284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1776 3 19960264 19962496 Lja3g1776 3 19960264 19962496 ECH
Lja1g0092 1 761489 763037 Lja3g1776 3 19960264 19962496 PCT