Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1774 ATGATAGTTAAGCCGACGGCGAAATTTGAAATGCCGAAACTCAAACGGTGTAAGCTTGATGAGCCTGATGATTCCGAGGGCTCTGGGGAGTCTCCGGCGGTTGCGAAGAAGCGTAGGGTGAATGGGTTTTACTCTCTGGGCATGCCTGGTGATGGAGAAGATTTCAGCAGTGGTTCTGGTTCTGGGACCAGTGTAGGGTCGCATTGGGGTGGTGGTGGTGGTGGTGAGGTTCAGTCTAATTCAAATTCTGCACCTCCGAATGGTAAAACTGCGGCGAAGGACCCTCGGCCTCCGTTGTTGCGGTCGTCTCGCGGCCGCCTTCAGATGCTACCGTCTAGGTTCAGTGACTCGGTTATTGATCCGTGGAAGAATCGAGGAATCAAAGCCGCGGAGGACGGAGATTCCAGCTTCGAAGATGATAGGGCTGACATCAGTACAGAGGGAGTTTTGAAAATTGACATGAGTGATAGCCATGGCTTGAACAATTCAGTGTGTTATCCGTGTCCTGAAGTGAAGGATGGCCAAAGGGAGGGTGCTGATTCGTCTGGTAATGGCGGAAGGACTGTGAAGACTGAGAGTAACACGTCTGGTCTCAGTTTTGATGGTGAAGACCAAAAGCCTGATGTGAATGTTGGGAAGAGGAAAGAGATTTACAAGCCAGAGGATTTTGCTTTGGGTGATGTAGTTTGGGCTAAATGTGGGAAGCGATATCCGGCATGGCCTGCTGTGGTAATTGATCCCATCTTGGAGGCTCCTGAATCCGTTCTCAGCTGTTGTGTTCCTGATGCACTTTGTGTGATGTTTTTTGGCTATTCAAAAAATGGATCGCAAAGGGACTACGCGTGGGTGAAGCAGGGAATGATATTTCCCTTCAAGGAATTCATGGACAGATTCCAGGGGCAGACCCAGTTGTACAAGAGCAAACCAAGTGACTTTCGCATGGCACTGGAGGAGGCAATGTTGGCCGAAAATGGTATTCTGGAATCACAGTTGGGAGCAGAGGATGTAACTGATGTAAAAGCTCATCCTTATGAACTTATGGAGGCCACAGGTTCTTGTGCTGATCAGGAATACTACTGCCAGGATCAGGATGCAAGATATTGTTCGGGCTGTGGTTTGTTGTTGCCATGCAAAACCATGAAGAAGATTAAGGATTCAAGTCACACACCTCAATTTTATTGCAAACATTGTGCTAAGTTACGAAAATCAAAACAATATTGTGGCATTTGCAAAAGGATTTGGCACCATTCTGATGGTGGGAATTGGATATGTTGTGACGGTTGTAATGTTTGGGTGCATGCTGAATGCGCTAAAATTTCCACCAAACTTTTCAAGGATCTGGAAAATTCAGAGTACTATTGTCCAGAATGCCAGGGAAAAGTCAATTGTAAAGTACTAGCACCGAAAACGCACAAGTCGAAAATCAAACCAACAGAGAATGGCCAAAAACCTATGATACCTGAGCAGGTAGTGGTGGTCTGCAATGGCATGGAAGGAATTTATATTCCAAAGCTTCATTTAGTTATGTGCAAGTGTGGCTCTTGTGGTTCAAGGAAGCAGACACTGAGTGAATGGGAAAAACATACAGGTTGCAGAGCCAAAAAATGGAAACATAGCGTGAAAGTGAAAAGCACAATGCTACAACTAGAAAAATGGATCACAGAGCACATTCCACAAGATGGAATTCCCCAGGAGTTAGATCAGCAGCAGGTACTTGCCTTTTTGCAAGAGAAGTATGAGCCAGTACATGCAAAATGGACAACAGAAAGATGTGCCATTTGCAGATGGGTTGAGGATTGGGAAGAGAATAAAATTATTATCTGTAACAGGTGCCAAATAGCAGTCCACCAAGAATGCTATGGGGCAAAAAATGTCCAGGATTTTACTTCTTGGGTTTGTAGAGTATGCGAAACTCCTGATGTTGAGAGAGAGTGTTGCCTTTGTCCAGTAAAAGGTGGTGCTTTAAAGCCAACTGATGTGGAGATGTTGTGGGTTCATGTAACATGCGCTTGGTTTCAACCGCAGGTTGTTTTCCAAAACCATGAAGCCATGGAACCGGCGGTAGGGATTCTCAGAATTCCTCCTAATTCCTTCGTGAAGACTTGTGTGATTTGTAAACAAAGCCACGGTTCCTGTACAAGTTGTGTGAAGTGTGCTACTTATTTTCATGTGATGTGCGCATCAAGGGCGGGGTATACCATGGAATTGCATTCTGCGGAGAAGAATGGGAGTCAAATAACGAAGAAGCTAATATACTGTGCAATTCACAGAGTCCCAAGTCCAGATTCAGTACTGGTTATGCATACACCCTTGGGGACTTTCTCTCCCGGAACTTCAATTCACAATCATCAGGGATGCTTCAGGGGATCAAGGCTGGTTTCATCAAAGAGGGTAGAGCTTAATGAATCTTCAACCACTGAAAATGACATGGTTGAACCACTGTCTGCTGCCAGATGTCGGGTGTACAGAAGGTCTACTAATAAGAGGGCTGACGTGCCAATAATTCACTTGCTGAGAGGACCGAGCCTTCATTGTTTAGGTGAAATAACTCAATTGAACAGCTGTAAGGATGCTGAAGATTCTAAAGTTTTCACTTCATTTAAGGAACGTCTTCATCATTTGCAGAAAATGGAAAAACTAAGAGTTTGCTTCGGAAAATCGGGTATTCATGGATGGGGTCTCTTTGCTCGTAGAGATATACAAGAAGGAGAGATGTTTCTTGAATATCGTGGTGAGAAGGTAAGGCGTAGTGTTGCTGATATGAGGGAAGCAAAATACCACGCGAAAGGCAAAGATTGCTATCTGTTCAAGATCAGTGAAGAAGTGGTAATCGATGCTACATATCAGGGCAATATAGCACGTTTGATAAACCATTCCTGCATGCCAAACTGCTATGCAAGGATTATGAGTTTGGGTGATCAAGAGGAAGAGAGCCGGATCGTTCTCATTGCCAAAACCAATGTTTCTGCTGGTGAAGAACTAACGTATGATTACAAGTTCGAAGTAGATGAGCGGGAAGAACAAAAAGTTCCTTGTCTTTGCAAAGCCTCCAATTGCAGAAAATATATGAACTAG 3075 0.4459 MIVKPTAKFEMPKLKRCKLDEPDDSEGSGESPAVAKKRRVNGFYSLGMPGDGEDFSSGSGSGTSVGSHWGGGGGGEVQSNSNSAPPNGKTAAKDPRPPLLRSSRGRLQMLPSRFSDSVIDPWKNRGIKAAEDGDSSFEDDRADISTEGVLKIDMSDSHGLNNSVCYPCPEVKDGQREGADSSGNGGRTVKTESNTSGLSFDGEDQKPDVNVGKRKEIYKPEDFALGDVVWAKCGKRYPAWPAVVIDPILEAPESVLSCCVPDALCVMFFGYSKNGSQRDYAWVKQGMIFPFKEFMDRFQGQTQLYKSKPSDFRMALEEAMLAENGILESQLGAEDVTDVKAHPYELMEATGSCADQEYYCQDQDARYCSGCGLLLPCKTMKKIKDSSHTPQFYCKHCAKLRKSKQYCGICKRIWHHSDGGNWICCDGCNVWVHAECAKISTKLFKDLENSEYYCPECQGKVNCKVLAPKTHKSKIKPTENGQKPMIPEQVVVVCNGMEGIYIPKLHLVMCKCGSCGSRKQTLSEWEKHTGCRAKKWKHSVKVKSTMLQLEKWITEHIPQDGIPQELDQQQVLAFLQEKYEPVHAKWTTERCAICRWVEDWEENKIIICNRCQIAVHQECYGAKNVQDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFQPQVVFQNHEAMEPAVGILRIPPNSFVKTCVICKQSHGSCTSCVKCATYFHVMCASRAGYTMELHSAEKNGSQITKKLIYCAIHRVPSPDSVLVMHTPLGTFSPGTSIHNHQGCFRGSRLVSSKRVELNESSTTENDMVEPLSAARCRVYRRSTNKRADVPIIHLLRGPSLHCLGEITQLNSCKDAEDSKVFTSFKERLHHLQKMEKLRVCFGKSGIHGWGLFARRDIQEGEMFLEYRGEKVRRSVADMREAKYHAKGKDCYLFKISEEVVIDATYQGNIARLINHSCMPNCYARIMSLGDQEEESRIVLIAKTNVSAGEELTYDYKFEVDEREEQKVPCLCKASNCRKYMN* 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1774 1024 ProSiteProfiles Zinc finger PHD-type profile. 404 460 IPR019787 -
Lja3g1774 1024 SMART set_7 880 1005 IPR001214 GO:0005515
Lja3g1774 1024 Pfam PWWP domain 226 322 IPR000313 -
Lja3g1774 1024 Pfam SET domain 891 998 IPR001214 GO:0005515
Lja3g1774 1024 Gene3D - 213 329 - -
Lja3g1774 1024 SUPERFAMILY FYVE/PHD zinc finger 404 469 IPR011011 -
Lja3g1774 1024 SUPERFAMILY SET domain 873 1021 IPR046341 -
Lja3g1774 1024 Gene3D - 484 563 IPR010919 -
Lja3g1774 1024 SMART PHD_3 406 458 IPR001965 -
Lja3g1774 1024 SMART PHD_3 590 637 IPR001965 -
Lja3g1774 1024 SMART PHD_3 701 757 IPR001965 -
Lja3g1774 1024 Gene3D SET domain 792 1024 IPR046341 -
Lja3g1774 1024 CDD PHD_ATX3_4_5_like 590 636 IPR042011 -
Lja3g1774 1024 ProSiteProfiles PWWP domain profile. 225 294 IPR000313 -
Lja3g1774 1024 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 1024 IPR025780 -
Lja3g1774 1024 ProSiteProfiles Zinc finger PHD-type profile. 588 639 IPR019787 -
Lja3g1774 1024 SUPERFAMILY FYVE/PHD zinc finger 588 653 IPR011011 -
Lja3g1774 1024 MobiDBLite consensus disorder prediction 171 208 - -
Lja3g1774 1024 MobiDBLite consensus disorder prediction 74 88 - -
Lja3g1774 1024 SMART PostSET_3 1008 1024 IPR003616 -
Lja3g1774 1024 CDD PHD_TCF19_like 407 457 - -
Lja3g1774 1024 ProSiteProfiles SET domain profile. 880 999 IPR001214 GO:0005515
Lja3g1774 1024 MobiDBLite consensus disorder prediction 9 33 - -
Lja3g1774 1024 ProSiteProfiles Extended PHD (ePHD) domain profile. 642 757 IPR034732 -
Lja3g1774 1024 CDD SET_SETD1-like 869 1020 - -
Lja3g1774 1024 ProSitePatterns Zinc finger PHD-type signature. 591 636 IPR019786 -
Lja3g1774 1024 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 585 639 IPR013083 -
Lja3g1774 1024 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 640 758 IPR013083 -
Lja3g1774 1024 MobiDBLite consensus disorder prediction 181 201 - -
Lja3g1774 1024 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 399 463 IPR013083 -
Lja3g1774 1024 ProSiteProfiles Post-SET domain profile. 1008 1024 IPR003616 -
Lja3g1774 1024 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 1 1024 - -
Lja3g1774 1024 Pfam PHD-zinc-finger like domain 644 756 - -
Lja3g1774 1024 PANTHER PHD FINGER PROTEINS 1 1024 - -
Lja3g1774 1024 SMART PWWP_4 223 292 IPR000313 -
Lja3g1774 1024 MobiDBLite consensus disorder prediction 1 123 - -
Lja3g1774 1024 Pfam PHD-finger 602 637 - -
Lja3g1774 1024 Pfam PHD-finger 406 459 IPR019787 -
Lja3g1774 1024 SUPERFAMILY Tudor/PWWP/MBT 216 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1774 Lja-Chr3 19945062 19954254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1774 347 431 EF-hand Containing Proteins AT5G28340 51.765 3.14e-21 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lja3g1774 zf-HC5HC2H_2 1.3e-28 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1774 - - lja:Lj3g3v2441840.1 1609.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1774 3 19945062 19954254 Lja3g1774 3 19945062 19954254 ECH