Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1763 ATGGAATCAGGGAGCATTGATAGTACTGTACCCTCCTTGATCATGGTGGATGAGGATGTGCGTCCCCATCTGTTTTCTTCAGTCACCAAGCTACATGGCAATGGTCCTACTGCTACCAGTGTCCACGAGATTCTTGAATGCCCTGTTTGCACCAATGCAATGTACCCTCCAATCCATCAGTGCCGCAACGGGCATACCCTTTGTTCGACATGTAAGACAAGGGTACACAATAGGTGCCCAACTTGTAGACAGGAACTGGGTGATATAAGGTGTCTGGCGTTGGAGAAGATAGCAGAATCACTTGAACTGCCTTGCGAATACAGATCTCTTGGGTGTCCAGAGATATTCCCCTATTACAGAAAACTCAAACATGAGTCTATTTGTAACTTCAGACCGTACAATTGCCCTTACACTGGGTCAGACTGCTCTGTTGTTGGGGATATTCCACACCTTGTTGCTCATTTAAGGGACGACCACCGTGTTGATATGTATTCTGCATGCACTTTTAACCACCGCTACGTCAAGGCTAATCCCATGGAAGTAGAAAATGCTACATGGATGTTAACAGTCTTCCACTGTTATGGTCACTATTTCTGTCTCCATTTTGAAGCCTTTCAACTAGGCACGGCTCCGGTTTACATGGCATTCCTCCGTTTCATGGGAGATGAAAGAGAAGCCAGGAGCTACAGCTACAGTCTTGAGGTTGGAGGAAGCGGGCGTAAACTAACATATGAGGGCAGTCCAAGAAGTATTAGAGATAGCCACAAGAAAGTTAGAGACAGCCATGACGGCCTTGTTGTGCATCGTAACATGGCAATTTTCTTCTCAGGTGGGGATAGTAAAGAGTTGAAGTTACGGGAAAGATATGGAAACAACGAACCCCTGTGGGTGGAGTGGACATACCCAACATGTATAGCTAGATTTTGCTTGCATCTTCCCCTCCATGTAATTTATTTAGAGGGTAATGTTCTTGCAAGCTGTTGA 984 0.4563 MESGSIDSTVPSLIMVDEDVRPHLFSSVTKLHGNGPTATSVHEILECPVCTNAMYPPIHQCRNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCEYRSLGCPEIFPYYRKLKHESICNFRPYNCPYTGSDCSVVGDIPHLVAHLRDDHRVDMYSACTFNHRYVKANPMEVENATWMLTVFHCYGHYFCLHFEAFQLGTAPVYMAFLRFMGDEREARSYSYSLEVGGSGRKLTYEGSPRSIRDSHKKVRDSHDGLVVHRNMAIFFSGGDSKELKLRERYGNNEPLWVEWTYPTCIARFCLHLPLHVIYLEGNVLASC* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1763 327 SUPERFAMILY RING/U-box 36 86 - -
Lja3g1763 327 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 171 286 IPR008974 GO:0005515
Lja3g1763 327 ProSiteProfiles Zinc finger RING-type profile. 47 83 IPR001841 -
Lja3g1763 327 Pfam Seven in absentia protein family 89 286 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lja3g1763 327 SUPERFAMILY TRAF domain-like 100 283 - -
Lja3g1763 327 PANTHER UBIQUITIN LIGASE SINAT3 1 286 - -
Lja3g1763 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 99 IPR013083 -
Lja3g1763 327 CDD RING-HC_SIAHs 45 83 - -
Lja3g1763 327 ProSiteProfiles Zinc finger SIAH-type profile. 100 160 IPR013010 GO:0008270
Lja3g1763 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 155 IPR013083 -
Lja3g1763 327 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1763 Lja-Chr3 19818205 19821392 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1763 27 286 C3H Transcription Factor Family AT2G41980 72.308 2.34e-145 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1763 K04506 - gmx:100792687 542.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1763 3 19818205 19821392 Lja3g1763 3 19818205 19821392 ECH
Lja3g1763 3 19818205 19821392 Lja1g0086 1 730898 734317 ECH