Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1761 ATGAAGATTGAGGCGGGGTTAGGAGGAGGTGGGTTGTGGAATGAAGATGACATAGCCATGGGAACAGAGGTTCTAGGCGCAAACGCTTTTGCTTACTTGTTTGCCGGCTCGTTTTCGAATGAGAATCAGTTAATGACGATTGGGACTGGCGAGAATCTGCAGAACAAGCTTTCGGATCTCGTGGAGCGTCCCAATTTATCGAACTTCAGCTGGAACTATGCAATTTTCTGGCAAATTTCGCAGTCCAAACATGGGGATTGGGTTCTGGTTTGGGGAGATGGGTGTTGCAGGGAGCCGAGGGAGGGGGAAGAACGTGGAGGAGGAGGAATCAGAGGGGTTCTTCGTGTTGAAGATGAGAAGCAGCAGAGGGTGAGGAAGAGGGTGCTGCAGAAGCTTCACACAACGTTTGGGGGTTCAGATGAGGACAATTATGCTATTGGGTTGGACCGTGTCACCGACACGGAGATGTTCTTTCTTGCTTCCATGTATTTCTCTTTCCCTCGTGGGCATGGTGGTCCAGGTCAGTGTTTTGCATCCGGGAAGCATTCGTGGATCTCGGATGCATTGAAATCTAGTTCTGATTACTGTGTGAGGTCTTTCTTGGCAAAATCTGCTGGAATTCAAACTATTGTTTTAGTCCCTACTGATTTGGGTGTGTTGGAAATGGGTTCTGTGAGAGTGGTGGGAGAGAGCATTGAATTGTTGCAGGCTGTGAAATCTGTGTTTTCAGCACAATCATCACTCACCAGGGTGAAGTCAATTTCATCACTGGATTTGGTTGGTGAAAAGAGAGATGAGAGTGCCCCCTTTTCTAGTTTAGCAATTGGGGGTTGTAATGGTAATAAGAATAGTAGTAGTAGTATTCATGGCAATAATAATGGTCATTATCATAATAGAGTAGAGGGAATTGGAGTTCCTAAGATTTTTGGGCAGGATTTGAACTCTGTGACTGTGACTCCTTTCAGGGAGAAACTTGCTGTTAGGAAAATGGAAGAGAGGCCATGGGGTGGTCATCCTCCTCCCAATGGGAAAAGCATAGGTTTTCCCAATGGTGTTCATGGTACTAGTTGGGGAGCTGGTCAAAGTTTGTGGCAGCCTGGCTCTGCAGAGATATTTGCTCCTCCGAGGACCTCGAAAAGCAGTGTGCCGGAGCGAGCCAATGGCGGTGCAAGGCATGATTTTCTGCTTAATAACTTTCAACAGCAAAGGCAGGTGCAGATGCAAATTGATTTCTCAGGAGCCACATCAAGGCCTTCTGTGATTGCAGAATCAGAGCTTTCTGATGTTGAGGGCTCATGCAAGGAGGAGAAACCGGGTGCTGCCGATGACAGAAGGCCGAGGAAGCGGGGCAGGAAGCCGGCTAATGGAAGGGAAGAGCCCCTCAATCACGTGGAGGCCGAGAGGCAAAGGCGTGAGAAGCTGAACCAACGCTTCTACGCTTTACGAGCTGTTGTTCCCAACATCTCCAAGATGGACAAGGCATCTCTGCTGGGAGATGCTATTTCGTACATCAATGAGCTACAAGCAAAACTCAAGAACTTGGAGTCAGAGAGAGCAAGACTTGGAAGAACCTCTAGAGATGAATCAGTGTTGCAGAAGGCCAACCCAAGAGTTGAAAATCATCAGAATTTTGGAGCTCCTGATGTGGATATTCAAGCCACACAAGATGGGGTCACCGTAAAAGTGAGTTGCTCTGTTGATGTTCATCCTGTTTCAAGAATCATCCAGGCATTCAAAGAGGCAGAAATCAGTGTTGTAGAGTCGAATCTCACAGCTTCAAATGATACCGTCTTCCACACATTCGTAGTTAAATCCCAAGGCCCTGAGCAGCTGACAAAGGAGAAGTTGATTGCAGTGTTTTCCAGAGAATCCAACTCCTCGCCGCCATTATCATCATCGGTAGGATAG 1908 0.4748 MKIEAGLGGGGLWNEDDIAMGTEVLGANAFAYLFAGSFSNENQLMTIGTGENLQNKLSDLVERPNLSNFSWNYAIFWQISQSKHGDWVLVWGDGCCREPREGEERGGGGIRGVLRVEDEKQQRVRKRVLQKLHTTFGGSDEDNYAIGLDRVTDTEMFFLASMYFSFPRGHGGPGQCFASGKHSWISDALKSSSDYCVRSFLAKSAGIQTIVLVPTDLGVLEMGSVRVVGESIELLQAVKSVFSAQSSLTRVKSISSLDLVGEKRDESAPFSSLAIGGCNGNKNSSSSIHGNNNGHYHNRVEGIGVPKIFGQDLNSVTVTPFREKLAVRKMEERPWGGHPPPNGKSIGFPNGVHGTSWGAGQSLWQPGSAEIFAPPRTSKSSVPERANGGARHDFLLNNFQQQRQVQMQIDFSGATSRPSVIAESELSDVEGSCKEEKPGAADDRRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAISYINELQAKLKNLESERARLGRTSRDESVLQKANPRVENHQNFGAPDVDIQATQDGVTVKVSCSVDVHPVSRIIQAFKEAEISVVESNLTASNDTVFHTFVVKSQGPEQLTKEKLIAVFSRESNSSPPLSSSVG* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1761 635 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 53 242 IPR025610 -
Lja3g1761 635 Pfam Helix-loop-helix DNA-binding domain 462 508 IPR011598 GO:0046983
Lja3g1761 635 Coils Coil 497 524 - -
Lja3g1761 635 CDD bHLH_AtAIB_like 455 529 - -
Lja3g1761 635 Gene3D - 451 524 IPR036638 GO:0046983
Lja3g1761 635 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 1 625 - -
Lja3g1761 635 PANTHER MYC 1 625 IPR045084 GO:0003700|GO:0006355
Lja3g1761 635 MobiDBLite consensus disorder prediction 414 469 - -
Lja3g1761 635 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 458 507 IPR011598 GO:0046983
Lja3g1761 635 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 461 523 IPR036638 GO:0046983
Lja3g1761 635 SMART finulus 464 513 IPR011598 GO:0046983
Lja3g1761 635 MobiDBLite consensus disorder prediction 428 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1761 Lja-Chr3 19782224 19785050 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1761 9 627 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 50.077 0.0 547
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja3g1761 bHLH-MYC_N 1.2e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1761 - - gmx:100807078 799.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1761 3 19782224 19785050 Lja3g1761 3 19782224 19785050 ECH