Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1758 ATGGAGCATCATTTGCAATGTGCTGCAGAAGATGACGTGGCAGAAGCAGCGGTGACCACCGCCGTGGAGAAATCCGACAGCGTGCGCGGCGGAACGCGCCACCCAGTCTACCGCGGCGTCCGGAAGCGGCGATGGGGCAAATGGGTGTCTGAAATTCGGGAGCCGAGGAAGAAGTCTCGCATATGGCTGGGGTCGTTTCCGTTGCCGGAGATGGCGGCGAAGGCCTACGACGTCGCCGCCTACTGCCTGAAGGGACGCAAGGCGCAGCTCAACTTCCCCAACGAGGTTCACCGCCTTCCGCCGCTGCCTCCGCCGTCTTCTTGCACTGCAAGGGACATCCAGGCGGCGGCGGCCAAGGCAGCTCGCATGATGGCCAAGAGAGCCTCCGCCGTGTCGCCGGAGAAGAGCGTTGTTACCTCGGATAGCGACGGCAGCGTAGCAGAGGACTTCTGGGGTGAGATAGAGCTGCCAGAGCTCATGAACGGCAGCTGGTGGAGTTCTTCCGGTGACATCACGGCGTTGCCGGAGGTTGAGGTGCCACCGCAGCAACCTTTCACGGCGTGCCTGTAA 570 0.6281 MEHHLQCAAEDDVAEAAVTTAVEKSDSVRGGTRHPVYRGVRKRRWGKWVSEIREPRKKSRIWLGSFPLPEMAAKAYDVAAYCLKGRKAQLNFPNEVHRLPPLPPPSSCTARDIQAAAAKAARMMAKRASAVSPEKSVVTSDSDGSVAEDFWGEIELPELMNGSWWSSSGDITALPEVEVPPQQPFTACL* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1758 189 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Lja3g1758 189 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 189 - -
Lja3g1758 189 PRINTS Ethylene responsive element binding protein signature 75 95 IPR001471 GO:0003700|GO:0006355
Lja3g1758 189 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Lja3g1758 189 Gene3D AP2/ERF domain 36 95 IPR036955 GO:0003700|GO:0006355
Lja3g1758 189 SUPERFAMILY DNA-binding domain 36 94 IPR016177 GO:0003677
Lja3g1758 189 CDD AP2 37 94 IPR001471 GO:0003700|GO:0006355
Lja3g1758 189 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 189 - -
Lja3g1758 189 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Lja3g1758 189 Pfam AP2 domain 35 85 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1758 Lja-Chr3 19685132 19685971 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1758 32 189 AP2-EREBP Transcription Factor Family AT1G01250 60.976 8.52e-52 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja3g1758 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1758 K09286 - gmx:100806544 252.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1758 3 19685132 19685971 Lja3g1758 3 19685132 19685971 ECH
Lja1g0078 1 658829 661305 Lja3g1758 3 19685132 19685971 PCT