Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1756 ATGGCACATCTGGAGTGTAGCCTCAGGGGTCAGGGGAGTTCTCAGCCAGGAAAAGGTTTGAAAGATGATGATCTGTATAGAGAGCTATGGAGGTTGTGTGCAGGACCATTGGTGGATGTTCCTCAAACTGGAGACAGAGTTTTCTACTTCCCTCAGGGTCACATGGAACAACTGCAAGCATCTACGAATCAGGAATTGAACCAGGAAATTCCCCATTTCAATTTACCGTCTAAGATTTTTTGCCGTGTTGTGAACATTCAGTTGTTGGCGGAGCAAGACACTGATGAGGTTTACGCTTGTGTCGCTTTGCTTCCAGAATCAGATCAAACTGAGCCTGAAAATCTTGATCTAACTCCTTCCGAAGCTCCGAAAGATAAATTTCACTCATTTTGCAAAATATTAACAGCATCTGATACTAGCACACATGGAGGATTTTCCGTTCTGCGGAAGCATGCTACTGAGTGCCTTCCTCCATTGGACATGAGCCAGGCAACTCCAACTCAGGAGTTGGCAGCGAATGATCTTCATGGATTTGAATGGAAGTTTAAGCATATATATAGAGGTCAACCAAGGAGGCATTTGCTTACAACTGGCTGGAGTACATTTGTCGCATCCAAAAGATTGGTTGCTGGAGATGCTTTTGTTTTCTTAAGAGGAGAGCATGGGCAACTGAGAGTCGGCGTGAGGCGTTTAGCTCGGCAGCAGAGTCCTATGCCTTCATCTGTGATATCAAGCCAGAGCATGCATCTTGGAGTGCTTGCCACTGCTTCCCACGCTGTTATGACTCGTACCATGTTCTTGGTTTATTACAAACCAAGGACTAGCCAGTTTATTGTTGGTTTGAACAAGTATCTGGAGGCACTCAAGAACAACTTTTCAGTTGGCATGCGTTTCAAGATGAGATTTGAAGGAGAGGACTCACCTGAGAGAAGATTTTCTGGTACTATTGTGGGGGTTGGGGATGTGTCTCAAGGATGGTTGAATTCTCAGTGGCGGTCATTGAAGGTTCAATGGGATGAACCGGCAACGATCCAAAGGCCGGACAGAGTTTCTTTTTGGGAGGTAGAGCCTTTCATGCCTTCTCCGGCTCTGAATGTCGCTCAACCAACAGTGAAGGGCAAGAGGTTTAGACCTGTTGATATTTCATCTTCTGGTTTCTGGTATCAAGGATCTTCCCAGGCTCATGAGCTTACCCAATTTGGTGGTGGTGGTGCTGAAGTCCAAAGCAAGGAAAATCAGATTGTGAGCTCTCTTAGGCAGAATGACATTAGTAGCAACCCTATCAAGACTAGCTCCAGAATATGGCCTTGTTCACCACATTTGAATGTCACTTCCAACTTTTTTTCTGATCCCAAAATCAAAGGGGTTAAATTACAATCATCAACCATCTCTAGTTATGCTTATGTTTCATCTAGACCAATTGATGGCCCCACATGTGTGGAAGATGATGGGAAGAAGAGTGAGAATCCCCTAGATTGTTGGTTATTTGGTGTTAATTTGAGTAACAACTCTAGCAATGGCATCGCTTGTTTGGAGAAAGAACTGGGATGTTCATGTCCAACTACTGTTCCTAGTGGTCCCAACGAATCTAATCCTGCTGGTGCATGTGAAACTGAGAGGGTCCAGAGTCCTGACTTTTCACTGTCCAACAAGGGGCAGAGCCAAATAATTTCTGAGGCATCACCAATTGAGTGGCAGAAGAAGCAGGCCTCTGTGACTGTACCAGCCATGAGGACTAGGACTAAGGTGCAAATGCAAGGTGTTGCTGTTGGTCGCGCAATTGACTTGGCCACATTGAGTGGCTATGATAATCTCATAGATGAGGTTGAGAAGTTGTTTGATATTAAAGGAGAGCTGCGTTTGCAAAACAAATGGGCTGTAACTTTCACTGATGATGAAAATGACATGATGCTCGTCGGTGATGATCCATGGCCGGAGTTCTGCTCCATGGTGAGGAGGATTTACATTTGCACAAGGGAGGAGTTGAAGAAGATGAAATGCAAGCTACCTGCTACTTCATCAGAGGTTGTTGAAGAGACTCTGTTGAGCCCAGATTCACAAATTAGGGATGAGGCTCAGCAATCTCACATGCCTTGA 2097 0.4506 MAHLECSLRGQGSSQPGKGLKDDDLYRELWRLCAGPLVDVPQTGDRVFYFPQGHMEQLQASTNQELNQEIPHFNLPSKIFCRVVNIQLLAEQDTDEVYACVALLPESDQTEPENLDLTPSEAPKDKFHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMSQATPTQELAANDLHGFEWKFKHIYRGQPRRHLLTTGWSTFVASKRLVAGDAFVFLRGEHGQLRVGVRRLARQQSPMPSSVISSQSMHLGVLATASHAVMTRTMFLVYYKPRTSQFIVGLNKYLEALKNNFSVGMRFKMRFEGEDSPERRFSGTIVGVGDVSQGWLNSQWRSLKVQWDEPATIQRPDRVSFWEVEPFMPSPALNVAQPTVKGKRFRPVDISSSGFWYQGSSQAHELTQFGGGGAEVQSKENQIVSSLRQNDISSNPIKTSSRIWPCSPHLNVTSNFFSDPKIKGVKLQSSTISSYAYVSSRPIDGPTCVEDDGKKSENPLDCWLFGVNLSNNSSNGIACLEKELGCSCPTTVPSGPNESNPAGACETERVQSPDFSLSNKGQSQIISEASPIEWQKKQASVTVPAMRTRTKVQMQGVAVGRAIDLATLSGYDNLIDEVEKLFDIKGELRLQNKWAVTFTDDENDMMLVGDDPWPEFCSMVRRIYICTREELKKMKCKLPATSSEVVEETLLSPDSQIRDEAQQSHMP* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1756 698 Gene3D - 127 231 IPR015300 -
Lja3g1756 698 Gene3D - 291 361 - -
Lja3g1756 698 SUPERFAMILY CAD & PB1 domains 579 655 - -
Lja3g1756 698 MobiDBLite consensus disorder prediction 678 698 - -
Lja3g1756 698 MobiDBLite consensus disorder prediction 1 20 - -
Lja3g1756 698 Pfam Auxin response factor 256 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lja3g1756 698 SMART B3_2 130 232 IPR003340 GO:0003677
Lja3g1756 698 Pfam AUX/IAA family 575 614 IPR033389 -
Lja3g1756 698 Pfam AUX/IAA family 624 662 IPR033389 -
Lja3g1756 698 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 673 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lja3g1756 698 ProSiteProfiles B3 DNA-binding domain profile. 130 232 IPR003340 GO:0003677
Lja3g1756 698 Pfam B3 DNA binding domain 130 230 IPR003340 GO:0003677
Lja3g1756 698 SUPERFAMILY DNA-binding pseudobarrel domain 121 259 IPR015300 -
Lja3g1756 698 CDD B3_DNA 128 230 IPR003340 GO:0003677
Lja3g1756 698 ProSiteProfiles PB1 domain profile. 578 659 IPR000270 GO:0005515
Lja3g1756 698 PANTHER AUXIN RESPONSE FACTOR 11 9 673 - -
Lja3g1756 698 Gene3D - 574 666 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1756 Lja-Chr3 19632361 19637800 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1756 25 665 B3 DNA Binding Superfamily AT4G23980 55.215 0.0 648
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lja3g1756 B3 7.9e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1756 K14486 - gmx:100795763 1085.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1756 3 19632361 19637800 Lja3g1756 3 19632361 19637800 ECH