Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1741 ATGAGAATTTGCTTCAACCTGAACCTGATTTTACAATTTTACACAAGTAATTTCTGGGTTATCTATTCTGATATGAAGCCTGAGAATGCTGAAGAAGCGCGTAAACATGATGACACTGTTCCATATCACAGACTGTTCTCATTTGCAGACTCCACTGACATCTTGTTGATGATTGTTGGCACCATTGGAGCCATTGGAAATGGTTTGAGCATGCCTATCATGGCATTGCTGTTCGGAGAATTGGTTAATGGCTTTGGAAATAACGTGTTTGGCCCTGACGTTGTCAACCAAGTTTCCAAGGTCTGTCTAAAATTTGTTTACTTGGGAATAGGCAATGGTGTGGCTGCATTCCTCCAGGTAGCTTGCTGGATGACCACAGGGGAGAGACAAGCTGCAAGAATAAGGGGCTTGTATTTGAAAACTATATTGAGACAAGATGTTGCTTTCTTCGATAAGGAAACAAACACCGGCGAGGTGATAGGGCGAATGTCAGGGGACACTGTTCTCATACAAGATGCCATGGGTGAGAAGGTTGGCAAATTTTTGCAGCTAATAGCTACATTCATTGGGGGCTACGTGATATCATTTATCAGAGGGTGGCTTCTTACTGTTGTCTTGTTATCCACTCTTCCACTTCTTGTCGCTGCAGGCGCTGCTATGGCCTATGTCATAGGAAGGATGGCATCCCGGGGTCAAAAAGCATATGCAAAAGCTGCACATGTAGTTGAACAGACAATTGGTTCAATAAAAACTGTTGCATCATTTACTGGGGAAAAGAAAGCAGTATCTAGTTACAAAAAACTTCTTGCAGATGCTTACAAATCAGGAGTTCATGAAGGTTTCTTTTCTGGAATGGCCAATGCCATGATTATGTCAGTCATTTTCTGCAGTTATGCTTTGGCTGTATGGTTTGGAGCAAAGATGATAATAGAAAAAGGATATGATGGAAGTCAGGTGACCAATATCATCGTTGCTGTTTTAACTGCTTCAATGTCTCTAGGTCAGGCGTCTCCTTCCCTAAGTGCTTTTGCGGCTGGTCAAGCTGCAGCTTATAAAATGTTTCAGACAATTGAACGAAAGCCAGAGATAGATGCTTATGATCCAAACGGAGAAATATTAGATGATATTCATGGTGAAATAGATTTAAGGGATGTTTATTTCAGTTATCCAACAAGACCCGAGGAGTTGATATTCAATGGATTCTCTCTTTATATACCTAGTGGTACCACTGCAGCTTTAGTAGGAGAAAGTGGAAGTGGAAAGTCTACAATTATAAGTTTGATAGAGAGATTCTATGATCCACAGGCAGGTCAAGTTCTTATTGATGGCATCAACATGAAAGACTTTCAGCTGAGATGGATCAGAGGAAAAATTGGCCTTGTTAGCCAAGAGCCGGCGTTGTTTGCATGTAGCATTAAGGATAACATTGCATATGGAAAAGAGGGAGCCACAATTGAAGAGATAAGGGTTGTTGTGGAGCTTGCAAACGCTGCTAAATTCATTGATAAACTGCCACAGGGATTGGACACCATGGTAGGTGAGCATGGAACTCAGCTATCTGGCGGACAAAAACAACGCATTGCCATTGCAAGAGCAATCCTGAAAGATCCAAGAATTTTACTTCTCGATGAAGCTACAAGTGCACTTGATTCAGAATCTGAAATGACAGTGCAAGAAGCTTTAGATAGGATCATGGTCAATAGAACTACTATTGTTGTTGCACATCGCCTGAGCACAGTGAGGAACGCTGACATGATCACTGTAATTCATAGAGGGAAAATGGTTGAGAAAGGAACACATGTAGAATTACTCAAGGATCTTGAGGGAGCTTACTCTCAACTTATACGTTTACAACAAGTAAACGAGTATTCAGAAGAAAGTACAGACAATCAAAACAAGAGAAACCTTTCCTCGGAGTCACTTAGAAGATCAGGATCATCTTTGAGTAATAGTAGGCGTCGTTCACTTTCAATTTCTCTAGGTTTACCTATAGTTAACGACCCTGATGCTGAATATGAAAATTTACAACCCAAAGAAAAATCACCAGAGGTTCCACTCCTACGCCTTGCTTCCCTAAATAAGCCAGAGATTCCAGCACTTCTAATTGGATGTGTAGCTGCCATAGCAAATGGTACAATACTTCCAATATATGGCGTTTTGCTTTCTAGTGTAATTAAAACATTATACGAACCATTTCCTGATATGAAAAAGGACTCCAAGTTTTGGTCACTGATGTTCGTTGTCCTTGGAGTTGCATCTTTAGTGGTAATTCCGGTCCGAGGTTACTTTTTCTCTGTGGCTGGCAACAGGTTAATCCAACGTATCAGGCTGCTTTGTTTTGAGAAGGTGATCAACATGGAAGTTGGTTGGTTCGATGAGCCTGAGCACTCAAGCGGAGCAATTGGTGCAAGGCTCTCAGCAGATGCTGCATCTGTACGCGCCCTTGTTGGTGATGCCCTAGGACTATTGATTCAAAACATAGCAACAGCATTGACAGGTTTGATTATTGCTTTCATTGCAAGTTGGCAACTAGCTTTTATTGTTCTTGTCATGGCTCCCCTAATGGGAATGAATGGATATGTTCAAATGAAATTCATGAAGGGATTCAGTGCAGATGCAAAGATGATGTATGAGGAAGCGAGTCAAGTTGCTAATGATGCAGTTGGAAGCATAAGAACAATAGCTTCTTTTTGTGCTGAAGAGAAAGTCATGGAACTATACAATACGAAATGTAAGGGTCCTGTTAAAACAGGAATACAACAAGGCTTGGTTAGTGGAACAGGATTTGGGGTTTCATTTTTCTTACTTTTTAGTGTCTATGCAACCACTTTCTATGCTGGAGCCAAATTTGTGGACGCTCGCAAGGCGTCATTCTCAGATGTTTTTCGGGTTTTCTTTGCTTTAACAATGGCAGCTGTTGGAGTTTCACAATCAAGTTCTCTAGCTCCTGATTCTAGCAAAGCCAAGACGGCCACTGCTTCTATATTTGAAATAATTGACAGGAAGTCAAAGATAGATCCAAGTGATGAATCTGGTACCACGCTGGATCGCACAAAAGGAGAAATAGAGCTTTGTCATGTAAGCTTTAAGTATCCATCTAGACCAGATATACAAATTTTCCGAGACCTTAGTTTGACTATCCATTCTGGAAAGACTATGGCCCTTGTTGGTGAAAGTGGAAGTGGGAAGTCCACAGTGATTGCCTTGTTGCAAAGATTTTATGACCCTGATTCAGGTCAAATTACACTTGATGGTATAGAAATTCAAAAATTGCAGCTCAAGTGGTTAAGGCAGCAGATGGGCATTGTAAGCCAAGAGCCAGTCTTGTTCAATGACACTATCCGTTCCAATATTGCATATGGAAAGGAAGACAATGCAACTGAAGCAGATATCATAACTGCAGCAGAACTAGCTAATGCTCATAGGTTTATTAGTGGCTTACAACAGGGTTATGATACAATAGTGGGAGAAAGAGGGATCCAACTATCTGGTGGGCAGAAACAACGGGTAGCCATTGCTCGTGCAATAATAAAAAGTCCAAATATATTGCTACTAGATGAGGCCACAAGTGCACTAGATTCTGAGTCAGAGAGAGGTGTCCAAGATGCATTAGACAGGGTGATGGTAAACAGGACAACTGTGGTTGTGGCACATCGTCTATCTACAATTAAAAATGCAGATGTGATTACAGTGCTTAAAAATGGAGTTGTAGTGGAGAAAGGAAGGCATGAGACTCTCATTAACATTAAGGATGGATTTTATGCTTCCTTAGTCCAACTTCATACAAGTGCAACTACTTTATGA 3804 0.4106 MRICFNLNLILQFYTSNFWVIYSDMKPENAEEARKHDDTVPYHRLFSFADSTDILLMIVGTIGAIGNGLSMPIMALLFGELVNGFGNNVFGPDVVNQVSKVCLKFVYLGIGNGVAAFLQVACWMTTGERQAARIRGLYLKTILRQDVAFFDKETNTGEVIGRMSGDTVLIQDAMGEKVGKFLQLIATFIGGYVISFIRGWLLTVVLLSTLPLLVAAGAAMAYVIGRMASRGQKAYAKAAHVVEQTIGSIKTVASFTGEKKAVSSYKKLLADAYKSGVHEGFFSGMANAMIMSVIFCSYALAVWFGAKMIIEKGYDGSQVTNIIVAVLTASMSLGQASPSLSAFAAGQAAAYKMFQTIERKPEIDAYDPNGEILDDIHGEIDLRDVYFSYPTRPEELIFNGFSLYIPSGTTAALVGESGSGKSTIISLIERFYDPQAGQVLIDGINMKDFQLRWIRGKIGLVSQEPALFACSIKDNIAYGKEGATIEEIRVVVELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDSESEMTVQEALDRIMVNRTTIVVAHRLSTVRNADMITVIHRGKMVEKGTHVELLKDLEGAYSQLIRLQQVNEYSEESTDNQNKRNLSSESLRRSGSSLSNSRRRSLSISLGLPIVNDPDAEYENLQPKEKSPEVPLLRLASLNKPEIPALLIGCVAAIANGTILPIYGVLLSSVIKTLYEPFPDMKKDSKFWSLMFVVLGVASLVVIPVRGYFFSVAGNRLIQRIRLLCFEKVINMEVGWFDEPEHSSGAIGARLSADAASVRALVGDALGLLIQNIATALTGLIIAFIASWQLAFIVLVMAPLMGMNGYVQMKFMKGFSADAKMMYEEASQVANDAVGSIRTIASFCAEEKVMELYNTKCKGPVKTGIQQGLVSGTGFGVSFFLLFSVYATTFYAGAKFVDARKASFSDVFRVFFALTMAAVGVSQSSSLAPDSSKAKTATASIFEIIDRKSKIDPSDESGTTLDRTKGEIELCHVSFKYPSRPDIQIFRDLSLTIHSGKTMALVGESGSGKSTVIALLQRFYDPDSGQITLDGIEIQKLQLKWLRQQMGIVSQEPVLFNDTIRSNIAYGKEDNATEADIITAAELANAHRFISGLQQGYDTIVGERGIQLSGGQKQRVAIARAIIKSPNILLLDEATSALDSESERGVQDALDRVMVNRTTVVVAHRLSTIKNADVITVLKNGVVVEKGRHETLINIKDGFYASLVQLHTSATTL* 1268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1741 1267 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 701 987 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja3g1741 1267 Gene3D - 370 619 IPR027417 -
Lja3g1741 1267 Gene3D - 1012 1262 IPR027417 -
Lja3g1741 1267 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 380 616 IPR003439 GO:0005524
Lja3g1741 1267 ProSitePatterns ABC transporters family signature. 519 533 IPR017871 GO:0005524
Lja3g1741 1267 Gene3D ABC transporter type 1, transmembrane domain 44 636 IPR036640 GO:0005524|GO:0016021
Lja3g1741 1267 Pfam ABC transporter 399 547 IPR003439 GO:0005524
Lja3g1741 1267 CDD ABC_MTABC3_MDL1_MDL2 1022 1260 - -
Lja3g1741 1267 Gene3D ABC transporter type 1, transmembrane domain 680 988 IPR036640 GO:0005524|GO:0016021
Lja3g1741 1267 Pfam ABC transporter transmembrane region 57 330 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja3g1741 1267 Pfam ABC transporter transmembrane region 700 972 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja3g1741 1267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1012 1260 IPR027417 -
Lja3g1741 1267 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1022 1259 IPR003439 GO:0005524
Lja3g1741 1267 Pfam ABC transporter 1041 1190 IPR003439 GO:0005524
Lja3g1741 1267 ProSitePatterns ABC transporters family signature. 1162 1176 IPR017871 GO:0005524
Lja3g1741 1267 CDD ABC_6TM_Pgp_ABCB1_D1_like 57 341 - -
Lja3g1741 1267 SUPERFAMILY ABC transporter transmembrane region 688 1006 IPR036640 GO:0005524|GO:0016021
Lja3g1741 1267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 370 618 IPR027417 -
Lja3g1741 1267 CDD ABC_6TM_Pgp_ABCB1_D2_like 690 1005 - -
Lja3g1741 1267 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 37 1263 - -
Lja3g1741 1267 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 58 345 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja3g1741 1267 PANTHER - 37 1263 - -
Lja3g1741 1267 SUPERFAMILY ABC transporter transmembrane region 41 367 IPR036640 GO:0005524|GO:0016021
Lja3g1741 1267 Gene3D ABC transporter type 1, transmembrane domain 989 1263 IPR036640 GO:0005524|GO:0016021
Lja3g1741 1267 SMART AAA_5 1049 1242 IPR003593 -
Lja3g1741 1267 SMART AAA_5 407 593 IPR003593 -
Lja3g1741 1267 MobiDBLite consensus disorder prediction 622 648 - -
Lja3g1741 1267 CDD ABC_MTABC3_MDL1_MDL2 380 618 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1741 Lja-Chr3 19456432 19461833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1741 31 1261 Calmodulin-binding Proteins AT2G36910 43.850 0.0 1040