Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1740 ATGGGAAGAGCTCCCTGTTGTTCTAAAGTGGGGTTGCACAAGGGTCCATGGACTCCTAAAGAAGATGCATTGCTTACCAAGTATATCCATGCTCATGGAGAAGGCCAATGGAAATCACTTCCCAAAAAAGCTGGGCTTCTGAGATGTGGAAAGAGTTGCAGACTAAGATGGATGAACTATCTGAGACCAGACATAAAGAGAGGGAACATCTCTCCTGAAGAAGATGATCTCATAATCAGACTGCACTCACTTCTGGGAAACAGGTGGTCCCTCATAGCAGGAAGATTACCAGGCAGAACCGACAATGAAATCAAGAACTATTGGAACACCCATCTCTGCAAGAAGAACATGAGACTTCAAGGAATCACAACAGATCACGAGTCCAATTACAACAACGAAGAAGAGTTAGATCCTGAACAAAAACCTGCAGGTTCTGCAAAGAAAAAGAAGAACACCAAGAAGAAGAACAAGAACAACAAGCAGAACAAGAAGAATGGTTCTGCAGAGGAAGAGAGGATTCAAGTGTATCTTCCAAAACCCATTAGAGTAAAGGCTTTAACTCTACCAAGATCGGATAGTGGGGCCTCCTACACCTTCGATTCAAATTCTTCAGCATCATCAAGCCAAGAAAAGGAAGAAGAAAACCCAGGAACAGAGCAAGTGATGTTAAATGACGATTTTGGGTTCTGGGGTGATGTCGACCAAGATATAATCAAGGGCAATTTGGACATTGATGAATGCCAGTCTTATTTTCCCTCGGATCATCATGGTTTAGAGAAACTGTATGAGGAGTATTTGCAGGTGTTGGACATGGATTATAGCCATTATGATTTGGATTGTTTTGCTGAATCTTTATTAGACTGA 864 0.4201 MGRAPCCSKVGLHKGPWTPKEDALLTKYIHAHGEGQWKSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNISPEEDDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLCKKNMRLQGITTDHESNYNNEEELDPEQKPAGSAKKKKNTKKKNKNNKQNKKNGSAEEERIQVYLPKPIRVKALTLPRSDSGASYTFDSNSSASSSQEKEEENPGTEQVMLNDDFGFWGDVDQDIIKGNLDIDECQSYFPSDHHGLEKLYEEYLQVLDMDYSHYDLDCFAESLLD* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1740 287 Gene3D - 14 66 - -
Lja3g1740 287 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja3g1740 287 CDD SANT 16 61 IPR001005 -
Lja3g1740 287 PANTHER MYB TRANSCRIPTION FACTOR 1 275 - -
Lja3g1740 287 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 275 - -
Lja3g1740 287 MobiDBLite consensus disorder prediction 193 211 - -
Lja3g1740 287 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lja3g1740 287 Coils Coil 151 171 - -
Lja3g1740 287 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja3g1740 287 MobiDBLite consensus disorder prediction 193 218 - -
Lja3g1740 287 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja3g1740 287 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lja3g1740 287 MobiDBLite consensus disorder prediction 147 161 - -
Lja3g1740 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lja3g1740 287 CDD SANT 71 112 IPR001005 -
Lja3g1740 287 Gene3D - 69 142 - -
Lja3g1740 287 SMART sant 13 63 IPR001005 -
Lja3g1740 287 SMART sant 66 114 IPR001005 -
Lja3g1740 287 MobiDBLite consensus disorder prediction 128 146 - -
Lja3g1740 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lja3g1740 287 MobiDBLite consensus disorder prediction 128 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1740 Lja-Chr3 19448276 19449802 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1740 1 125 MYB Transcription Factor Family AT5G49330 68.800 6.16e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja3g1740 Myb_DNA-binding 3.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1740 K09422 - gmx:100101857 346.665
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1740 3 19448276 19449802 Lja3g1740 3 19448276 19449802 ECH
Lja1g0069 1 611751 613099 Lja3g1740 3 19448276 19449802 PCT