Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lja3g1739 | ATGGAGGGGATAGATCCCAATTCATGTGTAAATAGGACAGTTATGGAGAAGAAAACAAGGCCACAAGAGCAAATTAACTGTCCAAGGTGCAATTCAACCAACACCAAGTTCTGCTACTACAACAACTACAGCCTCACACAACCTAGATACTTCTGCAAGACATGTAGAAGGTACTGGACAGAAGGTGGGTCTCTCAGAAATGTCCCAGTAGGAGGTGGTTCCAGAAAGAACAAGAAGGTTCTCACCTCATCTGCGGCGGCAGCGGCAGCAGCAGCAGCTTCATCAAAGGCTATTCCAGACCTAAACCCACAACCAACAACCCTCTCATCATCAGTTTCTAATTCCCAAAACCCTAAAATGCATGGAGGCCAAGATCTTAACCTTGCTTTCCCACCTATGGAAAACTATCATCATCATCATGGTATGGTTCCATATGTTGAGATGCACAATGGTGGTGATCACTCTTCTTCTTCTGCTCCAACTAATTCTCTTTCAGCTTTGGAGCTACTAAGGTATAGCATGGCATCAAGGGGCATGAACCCTTATGCTCCTAATAACTCTTTAATGCCAAACACAAATTCCCTATACCCTTCTGGATTTCCCATGCAAGAAGTTAAGCCAAGCCTAGGCTTTTCAGTTGATGGGATTGGGAACAGGTCATATGAACATCAGGTCCAAGAGAGTGGTGGTGGTGGCAGGCTTTTGTTCCCTTTTGGAGATCATGTGAAGCAGCTTTCTGCTGAACAAGTGGAACAGAATAAAGAACAAGGGAATTCAACTGGATATTGGACTGGAATGATGGGTGAAGGCTCATGGTAA | 819 | 0.4457 | MEGIDPNSCVNRTVMEKKTRPQEQINCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKVLTSSAAAAAAAAASSKAIPDLNPQPTTLSSSVSNSQNPKMHGGQDLNLAFPPMENYHHHHGMVPYVEMHNGGDHSSSSAPTNSLSALELLRYSMASRGMNPYAPNNSLMPNTNSLYPSGFPMQEVKPSLGFSVDGIGNRSYEHQVQESGGGGRLLFPFGDHVKQLSAEQVEQNKEQGNSTGYWTGMMGEGSW* | 273 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lja3g1739 | 272 | MobiDBLite | consensus disorder prediction | 251 | 272 | - | - | |
Lja3g1739 | 272 | ProSitePatterns | Zinc finger Dof-type signature. | 27 | 63 | IPR003851 | GO:0003677|GO:0006355 | |
Lja3g1739 | 272 | MobiDBLite | consensus disorder prediction | 251 | 266 | - | - | |
Lja3g1739 | 272 | MobiDBLite | consensus disorder prediction | 99 | 122 | - | - | |
Lja3g1739 | 272 | Pfam | Dof domain, zinc finger | 23 | 79 | IPR003851 | GO:0003677|GO:0006355 | |
Lja3g1739 | 272 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 12 | 268 | IPR045174 | GO:0003700|GO:0006355 | |
Lja3g1739 | 272 | MobiDBLite | consensus disorder prediction | 95 | 123 | - | - | |
Lja3g1739 | 272 | ProSiteProfiles | Zinc finger Dof-type profile. | 25 | 79 | IPR003851 | GO:0003677|GO:0006355 | |
Lja3g1739 | 272 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.8 | 12 | 268 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lja3g1739 | Lja-Chr3 | 19426001 | 19427854 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lja3g1739 | 13 | 272 | C2C2-Dof Transcription Factor Family | AT3G61850 | 49.645 | 8.63e-69 | 213 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-Dof | Lja3g1739 | zf-Dof | 4.2e-33 | No_clan |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lja3g1739 | 3 | 19426001 | 19427854 | Lja1g4791 | 1 | 64879554 | 64881573 | ECH | |
Lja3g1739 | 3 | 19426001 | 19427854 | Lja3g1739 | 3 | 19426001 | 19427854 | ECH | |
Lja3g1739 | 3 | 19426001 | 19427854 | Lja1g0068 | 1 | 595589 | 597666 | ECH | |
Lja1g0068 | 1 | 595589 | 597666 | Lja3g1739 | 3 | 19426001 | 19427854 | PCT |