Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1734 ATGAGGCCGATTTTCGCTGGGAACTTGGAGTATGATACCCGTCAGTCTGAGCTTGAACGCTTGTTCTCCAAGTATGGCAGGATTGAACGCTTGGACATGAAATCTGGTTTTGCTTTTGTCTATTTTGAGGATGAGCGTGATGGTGAAGAAGCAATTCGCGCACTTGACAATATTCCATTTGGTTATGACAAGCGACGTCTGTCTGTGGAGTGGGCTAGGGGTGAACGTGGGCGTAATCGTGATCCCCCAAAGGCAAACCAGAGGCCCACAAAAACCCTATTTGTGATTAACTTTGACCCAATTCGTACTAGAGTTCGTGATATAGAAAAGCACTTTGAACCTTATGGCAAGCTTCATCATGTTCGAATTCGTAGGAACTTCGCATTTGTGCAGTTTGAAACACAAGAAGATGCTACCAAAGCTCTAGAGTGTACAAATATGAGTAAGATACTGGACAGGGTGGTGACTGTAGAGTATGCTCTGAGGGATGATAGTGAGAGGGGTGACCATTATGACAGCCCTAGAAGAGGAGGGGGTTATGCAAGGTCGCCTAGTCCAGCTTATCGAAGGCGACCAAGTCCTGATTATGGTCGTCCTCGCAGTCCTGTATATGATAGGTATAATGGACCAGACAGGCGGAGGAGTCCTGATTATGGCAGGCCTAGGAGTCCTGATTATGGCAGGACCAGGAGTCCTGATTATGGCAGGCCCAGGAGCCCTGTAAATGCTAGATTTCGCAGCCGTTCACCTGTAAGGAGGTCAAGAACTTAG 771 0.4747 MRPIFAGNLEYDTRQSELERLFSKYGRIERLDMKSGFAFVYFEDERDGEEAIRALDNIPFGYDKRRLSVEWARGERGRNRDPPKANQRPTKTLFVINFDPIRTRVRDIEKHFEPYGKLHHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVTVEYALRDDSERGDHYDSPRRGGGYARSPSPAYRRRPSPDYGRPRSPVYDRYNGPDRRRSPDYGRPRSPDYGRTRSPDYGRPRSPVNARFRSRSPVRRSRT* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1734 256 SUPERFAMILY RNA-binding domain, RBD 3 165 IPR035979 GO:0003676
Lja3g1734 256 Gene3D - 1 81 IPR012677 -
Lja3g1734 256 Gene3D - 82 173 IPR012677 -
Lja3g1734 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 162 IPR000504 GO:0003723
Lja3g1734 256 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 5 202 - -
Lja3g1734 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 60 IPR000504 GO:0003723
Lja3g1734 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 155 IPR000504 GO:0003723
Lja3g1734 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Lja3g1734 256 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATED 5 202 IPR029537 GO:0000398|GO:0005681
Lja3g1734 256 MobiDBLite consensus disorder prediction 205 232 - -
Lja3g1734 256 MobiDBLite consensus disorder prediction 165 256 - -
Lja3g1734 256 SMART rrm1_1 3 70 IPR000504 GO:0003723
Lja3g1734 256 SMART rrm1_1 92 158 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1734 Lja-Chr3 19395105 19398044 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1734 4 164 Eukaryotic Initiation Factors Gene Family AT1G49760 23.626 1.10e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1734 K12893 - gmx:100801043 434.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1734 3 19395105 19398044 Lja3g1734 3 19395105 19398044 ECH