Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1731 ATGATGGTTCTAGATATGCTCACTTCTGGTCCTACCTCAACTGCCATTTCTCAAATTATAGAGACCATTGGTGAGTTCGTAAGCCATGCCGATAATGTCCTTGTGAACAAGGATAGTTTTAATGAACTTGCAGCTTACATGGAAAGAATTACGCCCATCTTAAAAGAATTGAGGAAAGAAAAAGTCAGTAATTCTGAGACATTCAACCATGCCATTGAGGTTATGAGCCGAGAAATTAAAGATGCAAAGCAACTGGCTCAAGAATGCAGCGAGAAGAGCAAGTTTTATCTCCTAGTGAATTGCAGGTCCATTGTTGTGCGCTTAGAAAAACACACAAAGGAGCTGAGCAAGGCTATTGCTCTTCTTCCTTTAGCCACAACCGGTCTTTCTTCAGGAATAATGGAAGAAATTGAAAAGCTGCGTGAAAATATGCAGACAGCTGGGTTTAAGGCAGCTTTAGCAGAAGAAGAGATTTTAGAGAAAATTGAGTCAGGGATAAGGGAAAACAATGTTGATCGTTTGTATGCCAATAACTTGGTGATCCTCATTTCAGAGGCTCTCGGGATTACAAATCAGAGGTCAACACTGAAGATAGAACTTGAAGAGTTTAAGAAAGAAATTGAAAATGCCCGTGTTGAGAAGGAATTGTTTGAAGCTAGGCAAATGGATCAGATCATTGCTTTGTTGGAAAGGGCTGATGTAGCCTCATCACCTAGGGAAAGGCAACTCAAACACTTGGCCAAACGCCAATCTTTGGGTAGTCAAATCTTGGAGCCTTTACAGTCATTTTATTGTCCCATCACCCATGATGTTATGGTGGACCCTGTCGAAACTTCATCAGCGCACACGTTTGAGAGAAGTGCAATAGAGAAGTGGGTTGCAGAAGGAAACAAATTGTGTCCTCTGACCTTGATTCCTCTAGACATATCAATTTTGAGACCTAACAAAACTTTGAAACAATCCATAGAAGAATGGAAGGATAGAAATACAATCATTAAAATTGGTGCATTAAAAGAAAAAATCCAGTCCGGAGATGATGTGCTGGATGATCTGGGAACTCTAAAGGAGTTGTGTGAACAAAAAGACCAACACAGGGAATGGGTAATACTGGAGAATTACATACCAGTTCTTATCCAAATTCTTGGTTCAAGAAACCGTGAAATAAGGAATCTTGCTCTTGCCATTCTTTACTCGCTGGCAAAGGATAATGAAGAAGCTAAGGAAAAAATTGCAGCTGTTGATAATGCAATTGAATCCATTGTCCCCTCCCTTGGACGTCGTCCAGGGGAAAGGAAGATAGCAGTAACATTATTGCTCGAATTGTCCAAATGTGATTTGGCACGAGAACACATTGGAAAAGTTCAAGGTTGCATACTGCTATTGGTGACTATGTCTAGCGGAGATGACAATCAAGCTGCCAAAGATGCGACAGAGCTATTGGAGAATCTTTCTTACTCTGATCAAAATGTTATACAAATGGCAAAGGCAAATTATTTCAAGCATTTATTGCAGCGTCTCTCCACAGGACCAGATGATGTCAAGATGATTATGGCTAAAACTTTAGCAGAAATGGAGTTAACAGACCACAATAAGGAGTTGTTGTTTGATTGCGGTGTACTGACTCCACTTCTTCACTTGTTCTCTCATAACGATCTTCAGGTGAAAACAGAGGCCACTAAAGCTCTTAGGAATCTATCAAGTTTAAAGAAAAATGGACTAGAGATGATTAGACAAGGGGCTGGACGACCGTTGCTTGGCCTCCTTTTCCTTCACAACATGCACACCTCAAGTTTGTGGGAAGATGTAGCAGCCATAGTTATGCAACTTGCTGCATCAGCAATCTCTCAAGATGCCCAAGCACCAGTTTCATTACTAGAATCTGATGAAGATGTTTTTAACCTCTTTTGTTTAATTAGGGTCACACTGCCTGAGGTGCAACAAAAAATTATCCTGACCTTTTATATATTGTGTCAGTCACCCTTGGCTTCATATATCAGGACCAAGCTGAATGAGTGCCCAGCTATACCAGACTTGGTTCGGTTGTGGGAGAATGAAAATCTAAACCTACGAGCAAGTGCTGTAAAGTTATTATCTTGCTTGGTGGAAAGTTGTGATGAAGCCATCATAGTGGAGATTGTTGATCAGAAGTGCATTGATACTTTAATCAGGATCCTTAAATCTTCATCAGATGAAGAGGAAATACATTCTGCTATGGGAATAATATGTTATATTCCAGAAATTGACCAGATAACACAATGGCTTCTGGATGCCGGTGCCCTGCCAATCATTTACAGGCATGTCAAAGATGGGAGAGACAGAGATCTTCAGAGGAGTAAATTAGTGGAGAATGCCACTGGTGCCCTTTGTCGTTTTACAGTTCCAACAAACTTGGAGTGGCAAAAGACTGCAGCTGAAACTGGGATCATAACTGTTTTAGTGCAGTTGCTTGAAAACGGAACTACCTTAACAAAACAACGCGCAGCTTTGTCTCTTGCTCAATTTTCTGAAAGTTCACTCAGGCTCAGCACGCCAATACCGAAGCGCAAAGGACTATGTTGCTTCTCAGCTCCAGCAGAAATTGGCTGCAGAGTTCATGGAGGAAAATGCACAGTCAACTCATCATTTTGCCTTTTGGAGGCCGAAGCTGTGGGACCGCTTACAAGGATTCTTGGGGAGTCTGATCCTGGGGTTTGTGAGGCTTCTTTGGATGCTCTATTAACATTAATTGAGGGTGAAAGACTACTGAGTGGCAGTAAAGTGCTTGCTGACGCAAAGGCTATACCGCTAATAATAAAATTTCTGGTTTCTACCTCCTCTGGGTTGCAAGAGAAGTCTCTACAAGCATTGGAAAGGATTTTCCAGCTATTGGAGTTCAGACAGATGTATGGAGCCTCAGCTCAAATGCCTCTAGTTGACTTAACTCAGCGGGGTAGTGGTAGTGTGAGATCCATTTCAGCTAGGATATTGGCACACTTGAACGTGCTTCAGGATCAATCTTCATATTTCTGA 3009 0.4151 MMVLDMLTSGPTSTAISQIIETIGEFVSHADNVLVNKDSFNELAAYMERITPILKELRKEKVSNSETFNHAIEVMSREIKDAKQLAQECSEKSKFYLLVNCRSIVVRLEKHTKELSKAIALLPLATTGLSSGIMEEIEKLRENMQTAGFKAALAEEEILEKIESGIRENNVDRLYANNLVILISEALGITNQRSTLKIELEEFKKEIENARVEKELFEARQMDQIIALLERADVASSPRERQLKHLAKRQSLGSQILEPLQSFYCPITHDVMVDPVETSSAHTFERSAIEKWVAEGNKLCPLTLIPLDISILRPNKTLKQSIEEWKDRNTIIKIGALKEKIQSGDDVLDDLGTLKELCEQKDQHREWVILENYIPVLIQILGSRNREIRNLALAILYSLAKDNEEAKEKIAAVDNAIESIVPSLGRRPGERKIAVTLLLELSKCDLAREHIGKVQGCILLLVTMSSGDDNQAAKDATELLENLSYSDQNVIQMAKANYFKHLLQRLSTGPDDVKMIMAKTLAEMELTDHNKELLFDCGVLTPLLHLFSHNDLQVKTEATKALRNLSSLKKNGLEMIRQGAGRPLLGLLFLHNMHTSSLWEDVAAIVMQLAASAISQDAQAPVSLLESDEDVFNLFCLIRVTLPEVQQKIILTFYILCQSPLASYIRTKLNECPAIPDLVRLWENENLNLRASAVKLLSCLVESCDEAIIVEIVDQKCIDTLIRILKSSSDEEEIHSAMGIICYIPEIDQITQWLLDAGALPIIYRHVKDGRDRDLQRSKLVENATGALCRFTVPTNLEWQKTAAETGIITVLVQLLENGTTLTKQRAALSLAQFSESSLRLSTPIPKRKGLCCFSAPAEIGCRVHGGKCTVNSSFCLLEAEAVGPLTRILGESDPGVCEASLDALLTLIEGERLLSGSKVLADAKAIPLIIKFLVSTSSGLQEKSLQALERIFQLLEFRQMYGASAQMPLVDLTQRGSGSVRSISARILAHLNVLQDQSSYF* 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1731 1002 Gene3D - 869 1000 IPR011989 -
Lja3g1731 1002 CDD RING-Ubox_PUB 263 303 IPR045210 -
Lja3g1731 1002 SUPERFAMILY ARM repeat 483 911 IPR016024 -
Lja3g1731 1002 SUPERFAMILY ARM repeat 341 524 IPR016024 -
Lja3g1731 1002 Coils Coil 193 220 - -
Lja3g1731 1002 Coils Coil 72 92 - -
Lja3g1731 1002 SMART arm_5 361 401 IPR000225 GO:0005515
Lja3g1731 1002 SMART arm_5 913 954 IPR000225 GO:0005515
Lja3g1731 1002 SMART arm_5 747 793 IPR000225 GO:0005515
Lja3g1731 1002 SMART arm_5 444 485 IPR000225 GO:0005515
Lja3g1731 1002 SMART arm_5 527 567 IPR000225 GO:0005515
Lja3g1731 1002 SMART arm_5 403 443 IPR000225 GO:0005515
Lja3g1731 1002 SMART arm_5 704 746 IPR000225 GO:0005515
Lja3g1731 1002 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 538 580 IPR000225 GO:0005515
Lja3g1731 1002 Gene3D - 13 126 IPR036537 GO:0007166
Lja3g1731 1002 SUPERFAMILY ARM repeat 876 992 IPR016024 -
Lja3g1731 1002 Pfam U-box domain 263 329 IPR003613 GO:0004842|GO:0016567
Lja3g1731 1002 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 372 407 IPR000225 GO:0005515
Lja3g1731 1002 Gene3D - 428 625 IPR011989 -
Lja3g1731 1002 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 1002 - -
Lja3g1731 1002 Pfam Armadillo/beta-catenin-like repeat 527 567 IPR000225 GO:0005515
Lja3g1731 1002 Gene3D - 336 427 IPR011989 -
Lja3g1731 1002 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
Lja3g1731 1002 SUPERFAMILY RING/U-box 249 332 - -
Lja3g1731 1002 Gene3D - 626 844 IPR011989 -
Lja3g1731 1002 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 1002 - -
Lja3g1731 1002 Coils Coil 137 157 - -
Lja3g1731 1002 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 335 IPR013083 -
Lja3g1731 1002 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1731 Lja-Chr3 19365356 19374707 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1731 250 1002 U-box Gene Family AT1G76390 29.514 3.08e-62 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1731 - - gmx:100799969 1467.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1731 3 19365356 19374707 Lja3g1731 3 19365356 19374707 ECH