Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1721 ATGTTGAACACTATGGAATATACTTACTCAGCTGAAGAAACTGCAGATGCTGAAACTTACACCACTAGCAGCTCAACTCAACCAGTTTCCATGAGAAAGAAGAGAAACAAAAACGCAAGAAGGTTCAGTGATGAACAGATCAAATCATTGGAGTCTATGTTTGAGTCAGAGTCAAGGCTTGAACCTAGAAAGAAGTTGCAATTGGCAAGAGAGCTTGGATTGCAGCCAAGACAGGTTGCAATTTGGTTTCAGAACAAGAGAGCTAGGTGGAAATCAAAGCAACTTGAGCGAGAATACAGCATGCTTAGCTCCAATTACAACAATTTGGCTTCCAAGTATGAAGCACTAAAGAAGGAGAAGCAAACATTACTAATACAGTTGCAGAAGCTGAGTGATTTAATGAAAACGCCATTAGAGAAAAGTGAGAGTTCTACACAAGGTAAAGCAGCAAACAGCATGGACAGTGAATCAGAAAATGGAGCAACCATCAAATGTGAGCCTGAAGTGAAGCCAAGCCTATCAATGGAAAGATCAGAACATGTACTTGGTGTTCTTTCAGATGATGACACCAGCACTAAGGTGGAGTACATTGGCCTGGAAGATGATGAACATGGCCTTCTGAATTTTGCTGATCAAGCAGATGGCTCATTGACATCACCAGAAGATTGGGGCGGTTTTGGCTCCAATGATTTCTTAGGCCACTCAAGCAGTGATTATCAATGGTGGGACTTCTGGTCCTAA 741 0.4184 MLNTMEYTYSAEETADAETYTTSSSTQPVSMRKKRNKNARRFSDEQIKSLESMFESESRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYSMLSSNYNNLASKYEALKKEKQTLLIQLQKLSDLMKTPLEKSESSTQGKAANSMDSESENGATIKCEPEVKPSLSMERSEHVLGVLSDDDTSTKVEYIGLEDDEHGLLNFADQADGSLTSPEDWGGFGSNDFLGHSSSDYQWWDFWS* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1721 246 MobiDBLite consensus disorder prediction 1 40 - -
Lja3g1721 246 ProSiteProfiles 'Homeobox' domain profile. 33 93 IPR001356 GO:0003677
Lja3g1721 246 Pfam Homeobox associated leucine zipper 93 134 IPR003106 GO:0006355|GO:0043565
Lja3g1721 246 Gene3D - 28 101 - -
Lja3g1721 246 SMART HOX_1 31 97 IPR001356 GO:0003677
Lja3g1721 246 ProSitePatterns 'Homeobox' domain signature. 68 91 IPR017970 GO:0000981|GO:0006355
Lja3g1721 246 PRINTS Lambda-repressor HTH signature 73 89 IPR000047 GO:0003677
Lja3g1721 246 PRINTS Lambda-repressor HTH signature 64 73 IPR000047 GO:0003677
Lja3g1721 246 SUPERFAMILY Homeodomain-like 18 95 IPR009057 -
Lja3g1721 246 MobiDBLite consensus disorder prediction 137 159 - -
Lja3g1721 246 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-7 17 246 - -
Lja3g1721 246 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 17 246 IPR045224 GO:0003700
Lja3g1721 246 Pfam Homeodomain 40 91 IPR001356 GO:0003677
Lja3g1721 246 MobiDBLite consensus disorder prediction 1 32 - -
Lja3g1721 246 Coils Coil 92 133 - -
Lja3g1721 246 CDD homeodomain 32 94 IPR001356 GO:0003677
Lja3g1721 246 MobiDBLite consensus disorder prediction 136 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1721 Lja-Chr3 19217767 19219439 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1721 38 246 Homeobox Transcription Factor Family AT2G46680 52.889 1.89e-65 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja3g1721 Homeodomain 2.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1721 K09338 - gmx:100797862 346.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1721 3 19217767 19219439 Lja1g4754 1 64216215 64218057 ECH
Lja3g1721 3 19217767 19219439 Lja3g1721 3 19217767 19219439 ECH