Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1720 ATGTTGGACAGTGGAGAAGATAACAATTTCAAACAAGTTTCACCCACCAACCATCACCACCACCACGAGAGAAGGAAAGTGGTCCCATCAGAACATATACCAAAAGGTTATTTGCCAATCAAAGTAGGGCACGGTGAAGAGCAACAAAAATTTGTGGTGCCTTTGATGTACCTCAACCACCCACTCTTCTCTCAGCTGCTGAAGGAGGCGGAGGAAGAATATGGTTTTGACCACCGAGGAACGCTAACCATCCCTTGTCGTGTGGAGGAGTTTAGGTATGTTCAAGACCATATTGATAGGGAAAAATACCCACTGGAACACCACCACCGCCATCATGTCATGAACTGTTTTAGGCCTTCATGTCAACAAGATCACAAGCCTTCATGTCAACAAGATCACAAATAG 405 0.4494 MLDSGEDNNFKQVSPTNHHHHHERRKVVPSEHIPKGYLPIKVGHGEEQQKFVVPLMYLNHPLFSQLLKEAEEEYGFDHRGTLTIPCRVEEFRYVQDHIDREKYPLEHHHRHHVMNCFRPSCQQDHKPSCQQDHK* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1720 134 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY 14 115 - -
Lja3g1720 134 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 14 115 IPR003676 GO:0009733
Lja3g1720 134 MobiDBLite consensus disorder prediction 1 29 - -
Lja3g1720 134 Pfam Auxin responsive protein 26 94 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1720 Lja-Chr3 19152549 19153142 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1720 29 99 Calmodulin-binding Proteins AT3G43120 52.113 1.50e-20 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1720 K14488 - gmx:100808516 154.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1720 3 19152549 19153142 Lja3g1720 3 19152549 19153142 ECH
Lja3g1720 3 19152549 19153142 Lja1g0055 1 527286 528271 ECH
Lja1g0055 1 527286 528271 Lja3g1720 3 19152549 19153142 PCT