Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1717 ATGGGTTGCGGTGAAAAGAGTCCCAAGAGCTTTCATTCGCACGGCGGCGATGGGAAGAAGCAGCAAGAATTCCGAGGCGTTCCGAAAGGGTGTATGGCGATCAAGGTGGGACAGGGCGAAGAGAAACAGAGGTTTGTGGTTCCTGTGATGTACTTGAACCATCCTCTGTTCATGCAGCTTCTGAAGGAGGCAGAGGAAGAGTATGGATTCGATCAGAAAGGAACCATCACCATCCCTTGCCATGTTGAGGAATTCAGAAACGTTCAGGGCTTGATTGATAGGCACAAGAGCCTTCATCATCATCATGGATGCTTTGGCTTCTGA 324 0.4969 MGCGEKSPKSFHSHGGDGKKQQEFRGVPKGCMAIKVGQGEEKQRFVVPVMYLNHPLFMQLLKEAEEEYGFDQKGTITIPCHVEEFRNVQGLIDRHKSLHHHHGCFGF* 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1717 107 MobiDBLite consensus disorder prediction 1 24 - -
Lja3g1717 107 MobiDBLite consensus disorder prediction 10 24 - -
Lja3g1717 107 Pfam Auxin responsive protein 21 88 IPR003676 GO:0009733
Lja3g1717 107 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 12 102 IPR003676 GO:0009733
Lja3g1717 107 PANTHER SMALL AUXIN-UP RNA-RELATED 12 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1717 Lja-Chr3 19125085 19125684 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1717 27 86 Calmodulin-binding Proteins AT5G20810 56.667 3.05e-18 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1717 K14488 - gmx:111188139 191.43