Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1715 ATGGGCCAGTGCTACGGCAAAACCAATCCCTCACCGGAAAATCACACCACCACCACAACCACCATAGTTCCCACCTCCACCACCGCCGCCGGGAATTTCACGCCGGCGCGGTCTTCCTCCGCCGCAAGCCCGTACCCGTACGGTGGTGGTGTGACGCCGTCGCCGGCGAGAGGCACGCCGAGGAGGTTTTTCCTCCGACGGCCGTTTCCGCCGCCTTCGCCGGCGAAGCATATCAGGGCGTCGTTGGCGAAGCGGTTGGGACACGCGAAGCAGCCGAAGGAGGGGACGATACCGGAGGAGGAGGGTGTGGTGGAGGAGGTGCTGGATAAGAGCTTTGGGTATAGCAAGAATATTGGTGCTAAGTATGAGCTTGGGAAGGAAGTGGGGAGAGGGCATTTTGGTCATACTTGCTATGCTAAGGGTAAGAAGGGTGACCTCAAAGACCAACCTGTAGCTGTTAAGATTATTTCCAAGGCTAAGATGACCACAGCAACAGCAATTGAAGACATTCGCCGAGAGGTGAAGATATTAAAAGCTCTATCTGGCCATAAGCATCTCATCAAATTTCATGATGCTTTTGAGGATGCCAACAATGTATACATAGTTATGGAATTGTGTGAAGGTGGGGAGCTTCTTGACAGAATTTTATCAAGGGGAGGAAAGTATACGGAGGAGGATGCCAAGGTTATAGTTTTGCAGATTCTAAGTGTAGTTGCATTTTGTCATCTTCAAGGCGTTGTCCACCGTGACCTGAAGCCTGAGAATTTCCTCTTCACTTCAAGAAGTGAGGATGCTGACATGAAGCTTATTGATTTTGGTCTGTCTGACTTCATCCGGCCAGACGAACGAATGAATGACATTGTTGGGAGTGCATATTATGTGGCACCTGAGGTCCTTCACAGGTCATATAGTCTGGAAGCAGATATATGGAGTATTGGTGTTATTAGCTTTATCTTGTTATGTGGAAGCCGACCTTTCTGGGCACGGACAGAATCTGGAATTTTCCGTGCAGTGCTTAGAGCTGACCTAAACTTTGATGATTTACCTTGGCCTTCTGCCTCTGCAGAGGCCAAGGACTTTGTGAAAAGGCTCCTACACAAGGACTACAGGAAAAGAATGTCTGCTGTCCAAGCTCTAAATCATCCTTGGTTGAGGGATGACAGCCGCCCCATCCCTTTAGATATATTAGTTTATAAACTAGTGAAGGCTTATATTCATGCGACACCATTCAAACGTGCAGCAGTGAAGGCCCTTTCAAAAGCCTTGACAGAGGATGAATTGCCCTATCTTAGGGCACAATTCAGTTTGTTGGAACCAAATAGAGAAGGGCACATCTCCCTTGACAATTTCAAAATGGCTCTTGTACGGCATGCAACTGATGCCATGAGGGAGTCAAGGGTTCTTGATATCATACAAACGATGGAACCACTTGCCTATAGAAAGTTGGACTTTGAAGAATTTTGTGCAGCTGCAATTAGCACTTATCAATTGGAGGCACTTGATAGGTGGGAAGATATTGCCTCCACTGCTTTTGAACATTTTGAGAGAGAGGGCAACCGTCTTATATCGGTTGAAGAATTAGCAAGAGAGTTGAATCTTGGTCCCCCAGCTTACTCAGTTATCAAAGATTGGATAAGAAATACTGATGGAAAGCTTAGTTTACTTGGATATACAAAATTTTTACATGGTGTGACTCCCCGTAGTTCAAATACGAGATACCGTTGA 1725 0.4696 MGQCYGKTNPSPENHTTTTTTIVPTSTTAAGNFTPARSSSAASPYPYGGGVTPSPARGTPRRFFLRRPFPPPSPAKHIRASLAKRLGHAKQPKEGTIPEEEGVVEEVLDKSFGYSKNIGAKYELGKEVGRGHFGHTCYAKGKKGDLKDQPVAVKIISKAKMTTATAIEDIRREVKILKALSGHKHLIKFHDAFEDANNVYIVMELCEGGELLDRILSRGGKYTEEDAKVIVLQILSVVAFCHLQGVVHRDLKPENFLFTSRSEDADMKLIDFGLSDFIRPDERMNDIVGSAYYVAPEVLHRSYSLEADIWSIGVISFILLCGSRPFWARTESGIFRAVLRADLNFDDLPWPSASAEAKDFVKRLLHKDYRKRMSAVQALNHPWLRDDSRPIPLDILVYKLVKAYIHATPFKRAAVKALSKALTEDELPYLRAQFSLLEPNREGHISLDNFKMALVRHATDAMRESRVLDIIQTMEPLAYRKLDFEEFCAAAISTYQLEALDRWEDIASTAFEHFEREGNRLISVEELARELNLGPPAYSVIKDWIRNTDGKLSLLGYTKFLHGVTPRSSNTRYR* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1715 574 PANTHER SERINE/THREONINE-PROTEIN KINASE 47 567 - -
Lja3g1715 574 Pfam Protein kinase domain 122 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1715 574 MobiDBLite consensus disorder prediction 1 20 - -
Lja3g1715 574 SUPERFAMILY EF-hand 410 563 IPR011992 -
Lja3g1715 574 ProSitePatterns Protein kinases ATP-binding region signature. 128 154 IPR017441 GO:0005524
Lja3g1715 574 Gene3D Phosphorylase Kinase; domain 1 118 208 - -
Lja3g1715 574 MobiDBLite consensus disorder prediction 25 61 - -
Lja3g1715 574 Gene3D Transferase(Phosphotransferase) domain 1 209 405 - -
Lja3g1715 574 SMART serkin_6 122 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1715 574 ProSiteProfiles Protein kinase domain profile. 122 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1715 574 PANTHER CDPK-RELATED KINASE 3 47 567 - -
Lja3g1715 574 MobiDBLite consensus disorder prediction 25 41 - -
Lja3g1715 574 CDD STKc_CAMK 121 383 - -
Lja3g1715 574 SUPERFAMILY Protein kinase-like (PK-like) 121 406 IPR011009 -
Lja3g1715 574 Gene3D - 406 563 - -
Lja3g1715 574 ProSitePatterns Serine/Threonine protein kinases active-site signature. 246 258 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1715 Lja-Chr3 19088206 19100266 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1715 1 568 EF-hand Containing Proteins AT3G50530 58.861 0.0 714
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lja3g1715 Pkinase 1.3e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1715 - - gmx:100796256 979.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1715 3 19088206 19100266 Lja3g1715 3 19088206 19100266 ECH
Lja3g1715 3 19088206 19100266 Lja1g0054 1 519449 526196 ECH