Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1713 ATGGAAGATTTCATCATGTCTCCTTCCTCTTCCTCTTCTCTTGTCTCTCAACCCCAAGACAACACACCACCAACACCACCCCTCGAGCAAAAGCTTCAATTTCTACTCCAAAGCCAACCCGACTGGTGGGTCTACGCCATTTTCTGGCAAACCACAACCAACACAAATGGCAACCTCTCCTTATCTTGGGGAGAAGGCCATTTCCAAGGCAGCAAAGAAACTTCCCCAACAAGTACTACCCAAAAGAAATTCAGCATAGATGACAGTGACAAGAGCGCAAACGGTGGCGACGCCGAGTGGTTCTACGTCATGTCGTTGACTCGCACGTTCTCTGTTGGCAGCGCCTCCTCCTCCTCCCTCCCCGGCAAGGCTTTCGCTTTAGGCTCAGTCCTCTGGCTCAACAGCAAGCATGAGCTTCAGTTCTACAACTGTGAGAGGTCACATGAGGCGCACGTGCACGGCATCCAAACCCTCATCTGCATCCCAACCACCAACGGCGTCATCGAAATGGGTTCCTACGACAACATCAAACAAAATTGGAGCCTCGTCAACCACGTCAAATCCATGTTCGGAGTATCATCATCACATTCGACACATTCGAATATGATGATGTCGAATGTGACAATGATACCCGAAGACAACAACATTAACAAAGTTCAGATCTTCAATGATGGCTGCAACCACAACAACATCTCCTTCGTGGACACCGGCATTTCTACCGGCGTCCGCGAAGGGAAACAAGATGATAGCGCAGTTAAAGGTGATAGCGCAATTAAAGGATTCACACAAGAAGCCAGCAACAAAACCTTGGAACCCAAAGTTGCTTGTTATGCAGAATCATCAGATCAGTCTGACTCTGATTGTGCAATTTTGGCACCAGAGAAGAAAGAAACAAAGAAGAGAGGGAGGAAACCGTTGGCGGGGCGCGAAACGCCGATTAACCACGTGGAGGCAGAGAGGCAGAGGAGGGAGAAGCTGAACCACCGGTTTTACGCGTTGAGAGCGGTGGTTCCGAATGTTTCAAGGATGGACAAGGCTTCTCTGCTCTCCGACGCGGTGGCTTACATCAGCGAGCTGAAAGGGAAGATTGAAGAGCTAGAGAAGAAGGGGAGGAGTAATTTCAAGAAGGTGAAGATGGAAATGGCGGACACAATGGACAACCAGAGTAGTACTACAGTGATGACTACTTCCACTGTGGTGGACCAAATGGGGTCGACTCAGGGTTCTGCGGTTGATGTTGATGTGAGGTTAATAGGGCCTGATGCCATGGTGAGGGTACAATCGGAGAATGTGAACCACCCAGGTGCGAGGCTAATGGGTGCTTTAAGGGATTTGGAGTTTCAGGTCCACCATGCTAGCATGTCGAGTGTTAATGATCTTATGGTTCAAGATGTTGTTGTTAAGGTTCCTAATGGGGTCATGAGAAATGAAGAGGGTCTTAAATCTGCGATTCTCATGAGATTGGGTCAGTAG 1473 0.4888 MEDFIMSPSSSSSLVSQPQDNTPPTPPLEQKLQFLLQSQPDWWVYAIFWQTTTNTNGNLSLSWGEGHFQGSKETSPTSTTQKKFSIDDSDKSANGGDAEWFYVMSLTRTFSVGSASSSSLPGKAFALGSVLWLNSKHELQFYNCERSHEAHVHGIQTLICIPTTNGVIEMGSYDNIKQNWSLVNHVKSMFGVSSSHSTHSNMMMSNVTMIPEDNNINKVQIFNDGCNHNNISFVDTGISTGVREGKQDDSAVKGDSAIKGFTQEASNKTLEPKVACYAESSDQSDSDCAILAPEKKETKKRGRKPLAGRETPINHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVAYISELKGKIEELEKKGRSNFKKVKMEMADTMDNQSSTTVMTTSTVVDQMGSTQGSAVDVDVRLIGPDAMVRVQSENVNHPGARLMGALRDLEFQVHHASMSSVNDLMVQDVVVKVPNGVMRNEEGLKSAILMRLGQ* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1713 490 CDD bHLH_AtAIB_like 308 370 - -
Lja3g1713 490 MobiDBLite consensus disorder prediction 67 83 - -
Lja3g1713 490 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 28 190 IPR025610 -
Lja3g1713 490 MobiDBLite consensus disorder prediction 1 28 - -
Lja3g1713 490 Pfam Helix-loop-helix DNA-binding domain 314 359 IPR011598 GO:0046983
Lja3g1713 490 MobiDBLite consensus disorder prediction 67 91 - -
Lja3g1713 490 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 311 371 IPR036638 GO:0046983
Lja3g1713 490 MobiDBLite consensus disorder prediction 1 19 - -
Lja3g1713 490 PANTHER MYC 1 488 IPR045084 GO:0003700|GO:0006355
Lja3g1713 490 Coils Coil 349 369 - -
Lja3g1713 490 Gene3D - 303 374 IPR036638 GO:0046983
Lja3g1713 490 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 310 359 IPR011598 GO:0046983
Lja3g1713 490 SMART finulus 316 365 IPR011598 GO:0046983
Lja3g1713 490 PANTHER TRANSCRIPTION FACTOR BHLH14 1 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1713 Lja-Chr3 19052808 19054537 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1713 1 490 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 33.677 1.51e-92 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja3g1713 bHLH-MYC_N 2.8e-47 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1713 - K13422 gmx:100795733 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1713 3 19052808 19054537 Lja3g1713 3 19052808 19054537 ECH