Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1707 ATGGGGAAGAAAGGAAGTAGTACCTCATGGTTAACTGCTGTCAAAAGAGCTTTCAGATCTCCCACCAAAGACACTGACAAAAAGAGTAGTAGAACAAGGGAAGATTATGATCATGAAGAAGATGAAGAGAAGAAGAGAGAAAAACGAAGATGGATTTTCAGAAAACCTGCGAATCATGAAACAACAACAGTGAACAACACTCAACAACAACAACAACAGCAGACACCAACGAAATTGAAGCATGATGTTGTGGCGGTTGCTGCTAGTGGAGGTTCAAGGACAGAGCAAGGTCAGAACCACGCGCTTGCGGTGGCGGTGGCAACTGCAGAGGCGGCTATGGCCACCGCTCAAGCTGCGGTGGAGGCGGCGAGGTTGACCAAGCCAAATACGAAGAATCATGCTCGGGAGCATCATGCTGCTGTTCTGATTCAAACTGCTTTCAGAGGCTATCTGGCGAGAAGAGCGCTTCGTGCGTTGAAGGGGTTGGTGAAGTTGCAGGCTCTGGTGAGGGGGCATAACGTGAGGAAGCAGGCGAAGATGACGCTTCGGTGCATGCAGGCTTTGGTGAGGGTGCAAGCGAGGGTTCTTGATCAGCGTATAAGGTCTTCTGTTGATGGAAGTAGAAAATCCACCTTCAGTGACACTGGTAGTGTTTGGGAATCACGGTATCTTCAGGATATTTCTGATAGGAAATCACTTTCAAGAGAGGGAAGTGGCATTGCAAGTGATTGGGATGAAAGACCACACACAGTTGAAGAAGTGAAGGCCATGTTGCAGCAGAGGAAGGAAGCAGCTATGAAGAGGGAGAGAACCTTGTCACAAGCTTTTTCCCAACAGATTTGGAGGAATTGTAGGACATCATCAATTGGAAATGAAGAGGAGATGGAAGAGAGACCGAAATGGCTTGACCGGTGGATGGCGCCGAAGCCGTGGGAGAATAGGGGAAGAGCTTCCACTGATCAAAGAGATCCCATTAAGACAGTGGAAATTGACACAGCTCAGCCTTATTCATATCTAGGAGCTAATTACAGAAGATCACATCCTAATTATCAGTATAACCCAAACAACCACCAACACCACCACCACAACCACCACCACCAACAACAACAACCACAGAGACATTCCATTGCTTCCCCAATCCACAGAACCCACCAAAATGGATCCCTTCACCAATCCCCTGCAACCCCTTCTCCAGCAAAATCAAGACCCATCCAAGTCAGGTCAGCGAGCCCCCGCTGCGTTAGAGAGGATAGAACCTACCCCACCTCTCAAACACCAAGCCTGAGGTCTAATTACCATTACACAGGGAACTTGTATCAAAATGCCAGGGTTGGAACAAGTAATGGTGCTGCTAGTGCTACAATCCCTAATTACATGGCAGCAACTGAGTCTGCAAAGGCGCGAATTCGGTCGCAGAGCGCGCCTAGGCAGAGGCCTTCGACACCGGAGAGGGACAGGGCTGGATCAGCTGCAAAGAAAAGGCTTTCATTCCCTGCTCCAGATCCTTATAATGTAGGAGTGGGTTATGGAAATTATGGGCATAGTTTAAGGAGTCCAAGCTTCAAGAGTGTGGCTGCATCACATATTGGGTTGGAGCATCAATCCAATTACTCCTCTTGCTGCACTGAGAGTCTTGGTGGTGAGGTTTCTCCTTCTTCAACTGGTGACCTTAGAAGGTGGTTGAGATGA 1689 0.4837 MGKKGSSTSWLTAVKRAFRSPTKDTDKKSSRTREDYDHEEDEEKKREKRRWIFRKPANHETTTVNNTQQQQQQQTPTKLKHDVVAVAASGGSRTEQGQNHALAVAVATAEAAMATAQAAVEAARLTKPNTKNHAREHHAAVLIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRIRSSVDGSRKSTFSDTGSVWESRYLQDISDRKSLSREGSGIASDWDERPHTVEEVKAMLQQRKEAAMKRERTLSQAFSQQIWRNCRTSSIGNEEEMEERPKWLDRWMAPKPWENRGRASTDQRDPIKTVEIDTAQPYSYLGANYRRSHPNYQYNPNNHQHHHHNHHHQQQQPQRHSIASPIHRTHQNGSLHQSPATPSPAKSRPIQVRSASPRCVREDRTYPTSQTPSLRSNYHYTGNLYQNARVGTSNGAASATIPNYMAATESAKARIRSQSAPRQRPSTPERDRAGSAAKKRLSFPAPDPYNVGVGYGNYGHSLRSPSFKSVAASHIGLEHQSNYSSCCTESLGGEVSPSSTGDLRRWLR* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1707 562 ProSiteProfiles IQ motif profile. 160 187 IPR000048 GO:0005515
Lja3g1707 562 Pfam IQ calmodulin-binding motif 163 179 IPR000048 GO:0005515
Lja3g1707 562 Pfam IQ calmodulin-binding motif 137 157 IPR000048 GO:0005515
Lja3g1707 562 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 131 181 IPR027417 -
Lja3g1707 562 SMART iq_5 135 157 IPR000048 GO:0005515
Lja3g1707 562 SMART iq_5 158 179 IPR000048 GO:0005515
Lja3g1707 562 MobiDBLite consensus disorder prediction 1 79 - -
Lja3g1707 562 MobiDBLite consensus disorder prediction 1 15 - -
Lja3g1707 562 MobiDBLite consensus disorder prediction 463 497 - -
Lja3g1707 562 MobiDBLite consensus disorder prediction 370 404 - -
Lja3g1707 562 PANTHER PROTEIN IQ-DOMAIN 1-LIKE ISOFORM X1 6 562 - -
Lja3g1707 562 MobiDBLite consensus disorder prediction 310 331 - -
Lja3g1707 562 PANTHER IQ-DOMAIN 5-RELATED 6 562 - -
Lja3g1707 562 MobiDBLite consensus disorder prediction 58 79 - -
Lja3g1707 562 ProSiteProfiles IQ motif profile. 136 164 IPR000048 GO:0005515
Lja3g1707 562 Pfam Protein of unknown function (DUF4005) 410 512 IPR025064 -
Lja3g1707 562 MobiDBLite consensus disorder prediction 542 562 - -
Lja3g1707 562 MobiDBLite consensus disorder prediction 343 432 - -
Lja3g1707 562 MobiDBLite consensus disorder prediction 417 432 - -
Lja3g1707 562 MobiDBLite consensus disorder prediction 19 56 - -
Lja3g1707 562 MobiDBLite consensus disorder prediction 310 327 - -
Lja3g1707 562 Gene3D - 133 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1707 Lja-Chr3 18970660 18973681 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1707 1 562 IQD Protein Family AT1G01110 54.717 1.20e-178 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1707 - - gmx:100786729 803.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1707 3 18970660 18973681 Lja3g1707 3 18970660 18973681 ECH