Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1706 ATGTCTCAACAAAGGCAAACTCAGATGATGTTTGGCGGTGGTTACAATAATGACACAACATTTACCAAGCTCTTTGTTGGAGGGCTAGCTTGGGAGACTCAAAGGGAAACCATGAGGAGGTACTTTGAGCAATTTGGAGAGATCTTAGAGGCTGTTGTCATCACAGATAAGAATACAGGGAGATCCAAGGGTTATGGCTTTGTCACATTCAAGGATCCAGAGTCAGCCATGAGAGCATGTCAGAACCCATCTCCAGTTATTGATGGGAGGAGGGCAAACTGCAATCTTGCGTCTCTTGGTGCAAATAAGAATCCGCCACCAACTCTTCACAATGGTGCAGGAAGATTCAGGCCTCAACCTGCAGTGGTAGCATCACCTGCTTATCATGGTTCTTCTTCATCTACATTTTTCTATCAACCAACTAGGCAATACACATTTCCATATTCAGCTTATGGATATTCTGGATATTCACAAGAGACCATGTATCCTACGAGTTACTATGGTGTTTATGGAGTTCAACAGTTTCCCCAATACTACCCATCCTCTGAGGCAGGAGGGTTGATACAAAATAATTATATCTACCCTTTCTATGGTCAATATGCACAGAATATACAGGCTCATGGTTATGGAGTTCAACACCCCCAAATGGCACAGTTTCCATTTTTGCCTCAGCATTATGGTTCCACAGGGATATTATCACTTCCTCCTCCAGTGGTGGCAGTGCCAACTACTGCAGCAGCAACCACAACTACAGTATCAACAAATGTGGTAATAGCAGAAGTTGGTACTTCACAAGCCTCTGGAACAGCATCTGAACAAAATTCTACTACATCTTGA 837 0.4325 MSQQRQTQMMFGGGYNNDTTFTKLFVGGLAWETQRETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPESAMRACQNPSPVIDGRRANCNLASLGANKNPPPTLHNGAGRFRPQPAVVASPAYHGSSSSTFFYQPTRQYTFPYSAYGYSGYSQETMYPTSYYGVYGVQQFPQYYPSSEAGGLIQNNYIYPFYGQYAQNIQAHGYGVQHPQMAQFPFLPQHYGSTGILSLPPPVVAVPTTAAATTTTVSTNVVIAEVGTSQASGTASEQNSTTS* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1706 278 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 81 IPR000504 GO:0003723
Lja3g1706 278 Gene3D - 1 108 IPR012677 -
Lja3g1706 278 PANTHER - 1 264 - -
Lja3g1706 278 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 22 99 IPR000504 GO:0003723
Lja3g1706 278 PANTHER BOULE-RELATED 1 264 IPR037366 GO:0003729
Lja3g1706 278 SUPERFAMILY RNA-binding domain, RBD 21 109 IPR035979 GO:0003676
Lja3g1706 278 SMART rrm1_1 23 95 IPR000504 GO:0003723
Lja3g1706 278 CDD RRM_RBM24_RBM38_like 22 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1706 Lja-Chr3 18961879 18964922 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1706 16 98 C2H2 Transcription Factor Family AT2G19380 43.373 2.47e-16 77.0