Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1704 ATGCCGGAAAACAATATGAGTATTTCTGTGAATGGACAATCTCAAGTCCCTCCTGGCTTCAGGTTTCACCCAACAGAAGAGGAGCTTCTGCAGTACTACTTGAGAAAGAAGGTCTCTTATGAGAAGATTGACCTTGATGTCATTCGTGATGTTGATCTCAACAAGCTTGAGCCATGGGACATACAAGAGAAATGCAAAATAGGAACCACTCCACAAAATGACTGGTACTTCTTCAGCCACAAAGACAAGAAGTATCCGACCGGAACACGCACCAATCGCGCCACCGCTGCAGGGTTCTGGAAGGCCACTGGCCGTGACAAGGTGATTTACAGCAACGGCAAGAGGATTGGAATGAGGAAGACTCTGGTTTTCTACAAAGGCCGAGCTCCTCATGGCCAAAAATCTGACTGGATCATGCATGAATACAGACTAGACGACAACAACACCAGCAACGAGACCAATATTGTGGCTAATGTGATTGGAGATGGTAGCCAGGAAGAAGGATGGGTGGTGTGCAGGATATTCAAGAAGAAGAACCATCTGAAAACCCTAGACAGCCCCTTGGCCTCCTCCATCTCCGGCGAAGGCGGAAGAAGAAGCCACTTGTTTGACGCTTGTGATGAGGGAGCTCTGGAGCAAATACTTCAGAAAATGGGAAGGGGATCATCATGCAAGGAAGAGAACAACTACGATCAAGCCAACTACAATAACTACGGAAGGTTTGTGAGGCCTTTCGACAACAATGGCGGTGGTGGAGGTGGCGGCTACCATGACAACAGGTTCTTGAAACTCCCAAGCTTGGAGAGTCCAAAATCCGCAAGCATGGACACCAATGACAACAATGATAACAACAATAACGGGTACCATCCGGTTATTCCGGTGGAGATGGCAACAGAGAATAATGAAGGGTCATTCACAATCCACCATCCATTGGAGGCATCACCATCATCAATGGTGGTAACATCAGGAGGTCTAACCAACTGGGCAGCGTTGGATAGGCTTGTTGCTTCTCAGCTGAATGGCCAGCCATGCTTCAATGATCCCACCATGGTGTTCTGCACTGGCAGTGACCACCATGATCTGCAACTCCCCACTCTCCGATCATCATCATCATCTTCATCAACATCATCACATGCTGCCAGGGCTGGTCCTGTTCCTGCAGCTGCATACATGACTCCTGCACAGGATCATCACTACACCACCACCAGCGAGATTGACCTGTGGAACTTTGCTCGTTCCACTTCCTCTGAGCCGCTCTGCCACGTGTCCAACACGTCAGTGTAG 1284 0.4891 MPENNMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVSYEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNNTSNETNIVANVIGDGSQEEGWVVCRIFKKKNHLKTLDSPLASSISGEGGRRSHLFDACDEGALEQILQKMGRGSSCKEENNYDQANYNNYGRFVRPFDNNGGGGGGGYHDNRFLKLPSLESPKSASMDTNDNNDNNNNGYHPVIPVEMATENNEGSFTIHHPLEASPSSMVVTSGGLTNWAALDRLVASQLNGQPCFNDPTMVFCTGSDHHDLQLPTLRSSSSSSSTSSHAARAGPVPAAAYMTPAQDHHYTTTSEIDLWNFARSTSSEPLCHVSNTSV* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1704 427 PANTHER NAC DOMAIN-CONTAINING PROTEIN 12 6 378 - -
Lja3g1704 427 MobiDBLite consensus disorder prediction 364 383 - -
Lja3g1704 427 Gene3D NAC domain 25 182 IPR036093 GO:0003677|GO:0006355
Lja3g1704 427 SUPERFAMILY NAC domain 10 177 IPR036093 GO:0003677|GO:0006355
Lja3g1704 427 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 6 378 - -
Lja3g1704 427 ProSiteProfiles NAC domain profile. 16 177 IPR003441 GO:0003677|GO:0006355
Lja3g1704 427 MobiDBLite consensus disorder prediction 364 380 - -
Lja3g1704 427 Pfam No apical meristem (NAM) protein 17 144 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1704 Lja-Chr3 18899629 18901610 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1704 1 426 NAC Transcription Factor Family AT2G46770 55.125 2.28e-138 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja3g1704 NAM 4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1704 - - ahf:112734309 606.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1704 3 18899629 18901610 Lja3g1704 3 18899629 18901610 ECH