Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1694 ATGGCACTAGCTCTGCTACCTTCTTTCCCCTCTCCCTCTTCAGCTCTAACCTTCAACCACAAACCCCAACCACCACCTTCATCCAAACCCTTCGTTTCACATTTCAGACACCCAAACTGTGATCCCTGCTTATTCTCCACAACCACAATTCTACAACCTTCTACATGGAAACCTACCCTTTTTGTGGCGGCAGCGATTCCAGAAGCGGTTAACGGAGAAAAATCTCTCAACACTCAAAACGACGACGTTTTCAAGAATGAGGAGGAGGAGCAGCAACCACCGCAGAGGAGGCCCAGAGGACCCTGTGAAATCTATGTCTGCAATCTTCCCAGAAGCTGCAACGCTGCTCACCTACTTGATTTGTTCAAGCCTTATGGAACCATTATATCTGTTGAGGTTTCCAGAAATGCTGAGACTGGTGAAAGTAGGGGATGTGGTTATGTCATAATGGAATCCATAAACTCAGCAAAAAGTGCAATTGCTGCATTGGATGGATCAGATGTTGGGGGGCGCGAATTGCGGGTTAAATTTTCAGTTGAGATGAGTCTTGAAAGGACGGATGCCAATGCGAATGCGGGGGAAATGTACGCTTCTCCCAAGAGAACATTTTACTATGAAGCTCCTCATAAGTTGTATGTGGGCAATCTTGCTAGGGTTGTTAAACCTGAGCAGTTGAGAAATCATTTTATCAGATTTGGGAATGTGCTTAGTGTTAGAGTGTTGCATGATCGTAAACAAGGGAAAGCCCGGGTCTATGCGTTTCTCTCCTTTGAATCAGAGGCTGAACGTGATGCAGCAATGTCTCTTAATGGAACAGAATTTTATGGCCGTACTATTGTAGTCAGAGAGGGCGCACAGAGGACTGAGCCTTAA 873 0.4582 MALALLPSFPSPSSALTFNHKPQPPPSSKPFVSHFRHPNCDPCLFSTTTILQPSTWKPTLFVAAAIPEAVNGEKSLNTQNDDVFKNEEEEQQPPQRRPRGPCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIMESINSAKSAIAALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHKLYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYGRTIVVREGAQRTEP* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1694 290 MobiDBLite consensus disorder prediction 80 96 - -
Lja3g1694 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 104 174 IPR000504 GO:0003723
Lja3g1694 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 279 IPR000504 GO:0003723
Lja3g1694 290 SUPERFAMILY RNA-binding domain, RBD 207 285 IPR035979 GO:0003676
Lja3g1694 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 286 IPR000504 GO:0003723
Lja3g1694 290 MobiDBLite consensus disorder prediction 72 100 - -
Lja3g1694 290 SUPERFAMILY RNA-binding domain, RBD 91 180 IPR035979 GO:0003676
Lja3g1694 290 SMART rrm1_1 103 176 IPR000504 GO:0003723
Lja3g1694 290 SMART rrm1_1 210 282 IPR000504 GO:0003723
Lja3g1694 290 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 27 289 - -
Lja3g1694 290 Gene3D - 188 289 IPR012677 -
Lja3g1694 290 Gene3D - 67 187 IPR012677 -
Lja3g1694 290 PANTHER OS02G0815200 PROTEIN 27 289 - -
Lja3g1694 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 180 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1694 Lja-Chr3 18781564 18783495 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1694 92 289 Eukaryotic Initiation Factors Gene Family AT2G36660 32.500 1.47e-20 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1694 - - gmx:100792560 281.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1694 3 18781564 18783495 Lja3g1694 3 18781564 18783495 ECH