Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1693 ATGGATGAAGTAGCAGCGAATTTGAACAGAACCATGGAGCAGCAGCAGAAGAATGACGACGGCAACGGTGGTGGGGGTGGTGGTCGTTCTGCTGAGGTGGTTAGGTGTGACACGTTTCTACCACAAGTGGAGCTCACAATCCTCCTCGTCGAACCCGATCATTCAACTCGCCATATCATTTCCGCACTTCTCAGAAAATGCAGTTACAGAGTTGTTACGGTTTCTAACGGATTAAAGGCATGGGAAGCGTTGAAGAGTAAGGGACCTGAGATAGATCTCATATTGACAGAATTGGAGTTGCCAGAAATATCTGGATTTGCTCTACTTTCTATGATCATGGAGCATGATGTGTGCAAAAACATTCCTGTGATAATGATGTCTTCTCAGGATTCAGTTAGCATGGTGTTGAAATGCATGTTAAAAGGTGCAGCTGATTTTCTTATCAAACCAGTTAGGAAAAATGAGCTTACCAATTTGTGGCAGCATGTATGGAGAAGAAAGGCTGTTAGCAGCGTTCCTCAAAATACAGCATTTCCGCAGGCGTGCAATCAATCGGGTGGCACTGTGAATTCCTCAAAGAAAAATAGTGAATGCAGTGAGAAATTGAGTGAGGGTAAAAGCACATGTACATCAACATTTGTGGAAGCTGAAAGTGCAGGAATGGAAAATATGCAGGATCCGTCTCAGTTGAATATATCTTCAAAATCGAGCAACGTTGATGTGGAGAAGCATGAAAAGTTTACCAAATTTGAAAGGGAGTCAACTAAGCATGATGATGAAACAGAAGAAAAATCAGTTATGTTTGCATCAGAGACTGCAAGGTGCAACAGAACTTCTAAATCGACATATTTAAAGCTAGAGCAAGATGATGATTCTGCTGAATTTGAAAACCAGGATAAAATTTTCAGAGATGAGTTAAGCAAAGACAATCCTAATATTGACACCGAGATACATGGGTGGAGTCATGAGCTGGTAGAGCCTTCTAGAGGAGATATTAACTTTATTGCCACAGTTGAAAATCCTCCAAAGCACAAAAGTGAAAACTGTTGTCTTGATGGTGGTAACATGACCAAGTTTGATTCTGATACACAATTGAAGCTTTCTTTAAGAAGAGATTTTCCCGACAGCTCATGTGAAAAACAAAGTGAAGCAACTGGAGAATGGCAAAGATTAAACCATTCAAATGCTTCTGCCTTTTCTCGGTATAATGGCAGTAAGTTGTTGCAGTCTCCTTTTTCAACACCACTGGTTACATCTGCCAAAGTAAATGCAAATTGTGATTCTCATAAGTCTTATAAATTAGCTGCAATTACTGCTGATAATAGTTGTTTGAATGGTGGCTCAAATCAAAGTCAAGAGAATATGATCACTAATGTCTATAATTCTGTGTTCCATGCACAATCTGCTGTTCATCCCATATGGAAACCGAAACCAGTTTGCCAAAAGGAAAGTTCTCCCTTTCCCTCAAGTATCTCTTCCCAATCCAATCAAAGTCACAACTCAAGCCAAAATAATTACTGTCCAGATGATGCTAACTTCACTTCTCTTAATCAAAATGTACATGATGAAATTAACATGGATCATACAAGACATGATTTTCCTGCAATGAGTCAGTGTGCTAATGATTTATGCCCAGATACGGCAAATCATATAAACAGTAGTACATATGGAAGTGGAGATGATGGAAATTCTACTTCAGCTGTAGTATCTAAGAACAACCCTGAAAGTTTTAGTGATGGTGGTTCTGAAAGTTTTAGTAATGGTGGTTGCTATACTCATGGTGGATTTAGATTGATTGATGCTCATCGCTCCAGTCATAGAGAAGCAGCTCTTACAAAGTATCTACTGAAGCGGAAAGAGAGATGTTATGTGAAAAAGGTTCGATATCAAAGTCGGAAAAAATTTGCAGAGCAGCGCCCTCGGGTAAAGGGACAATTTGTATGCCAAGTATCTGATGATAATCCGGCCACTGATGCTGGTGGTGATTCATGA 1992 0.3986 MDEVAANLNRTMEQQQKNDDGNGGGGGGRSAEVVRCDTFLPQVELTILLVEPDHSTRHIISALLRKCSYRVVTVSNGLKAWEALKSKGPEIDLILTELELPEISGFALLSMIMEHDVCKNIPVIMMSSQDSVSMVLKCMLKGAADFLIKPVRKNELTNLWQHVWRRKAVSSVPQNTAFPQACNQSGGTVNSSKKNSECSEKLSEGKSTCTSTFVEAESAGMENMQDPSQLNISSKSSNVDVEKHEKFTKFERESTKHDDETEEKSVMFASETARCNRTSKSTYLKLEQDDDSAEFENQDKIFRDELSKDNPNIDTEIHGWSHELVEPSRGDINFIATVENPPKHKSENCCLDGGNMTKFDSDTQLKLSLRRDFPDSSCEKQSEATGEWQRLNHSNASAFSRYNGSKLLQSPFSTPLVTSAKVNANCDSHKSYKLAAITADNSCLNGGSNQSQENMITNVYNSVFHAQSAVHPIWKPKPVCQKESSPFPSSISSQSNQSHNSSQNNYCPDDANFTSLNQNVHDEINMDHTRHDFPAMSQCANDLCPDTANHINSSTYGSGDDGNSTSAVVSKNNPESFSDGGSESFSNGGCYTHGGFRLIDAHRSSHREAALTKYLLKRKERCYVKKVRYQSRKKFAEQRPRVKGQFVCQVSDDNPATDAGGDS* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1693 663 ProSiteProfiles Response regulatory domain profile. 46 164 IPR001789 GO:0000160
Lja3g1693 663 MobiDBLite consensus disorder prediction 554 584 - -
Lja3g1693 663 ProSiteProfiles CCT domain profile. 607 649 IPR010402 GO:0005515
Lja3g1693 663 PANTHER PRR RESPONSE REGULATOR 33 229 - -
Lja3g1693 663 Gene3D - 45 292 - -
Lja3g1693 663 PANTHER TWO-COMPONENT RESPONSE REGULATOR 33 229 IPR045279 GO:0009736
Lja3g1693 663 PANTHER TWO-COMPONENT RESPONSE REGULATOR 458 639 IPR045279 GO:0009736
Lja3g1693 663 PANTHER TWO-COMPONENT RESPONSE REGULATOR 237 459 IPR045279 GO:0009736
Lja3g1693 663 SUPERFAMILY CheY-like 45 168 IPR011006 -
Lja3g1693 663 Pfam Response regulator receiver domain 47 158 IPR001789 GO:0000160
Lja3g1693 663 PANTHER PRR RESPONSE REGULATOR 458 639 - -
Lja3g1693 663 PANTHER PRR RESPONSE REGULATOR 237 459 - -
Lja3g1693 663 Pfam CCT motif 607 647 IPR010402 GO:0005515
Lja3g1693 663 CDD psREC_PRR 47 150 - -
Lja3g1693 663 SMART REC_2 45 160 IPR001789 GO:0000160
Lja3g1693 663 MobiDBLite consensus disorder prediction 484 508 - -
Lja3g1693 663 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1693 Lja-Chr3 18768047 18771830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1693 355 650 Response Regulator Gene Family AT5G24470 31.111 2.72e-20 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Lja3g1693 Response_reg 3.4e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1693 K12130 - gmx:100791698 690.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1693 3 18768047 18771830 Lja3g1693 3 18768047 18771830 ECH
Lja3g1693 3 18768047 18771830 Lja1g0040 1 417081 420765 ECH