Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1690 ATGATGGAGAGGCTTCAAGGACCCATCAATTCTTGTTTTTTTGGTGAACATTTGGAAGTGAATTGTTTAGAGCAGGCTTTGGTTGAAGCAGAAAGCTTGAGACTTGAAGAGGAACAACATCTTCTCATTTCAACTTTAGAGGATAACATGCCATTTCTGCAGATGCTTCAGAGTGTAGAGTATCATCCACAACAGTTTTTCCCTCTGAAAGAACCAAGCTTCCAAACACTTCTGAGGCTGCAACACCTGAAGAAACCATGGGAACTTGAGAATCAAACTCAAGCTCAAGCAGCATTTGAACAACTTGAGAGCTGTGTGACACATGACATGTTAGAGATGCAGTCACCTGTGAAATCAGAAAGCAACTACGAGCTTCAACAACAACAACACACACATTCAGCTTCATGTGTTGAAAAACTCAGCTATGAGTGTAACCAGGAAGAACCACTCAAAACAGAACAGTCATGCCTCAAATCTCAGCATGCAACAAGGGAAAGGAGAAAGAGGAAGAGAACAAGGTTAACTAAGAACAAGGAAGATGTGGAGAATCAACGCATGACCCACATTGCTGTTGAACGCAACCGGAGACGCCAGATGAATGACCATCTCAGTGTTCTAAGGTCCCTCATGCCCCCTTCATATATTCAAAGGGGTGACCAAGCTTCAATTATTGGAGGTGCAATAGATTTTGTGAAGGAGTTGGAGCAGTTGGTTCAATCTCTTGAATCACAGAAAAGGATGAGAAAAAATGAAGAGGCTTGTTCTTCTTCATCTGTGTTTTCTAAGCCACCATCAGATTCATCTCCATCACATGGTTTTGGAATGAGGTCATCATCATCCACAGAAGGAGATGAGGTGAAAGCAGAGAATAAGTCAGAATCTGCAGACATAAAAGTGACCTTGATTCAATCCCATGTGAACTTGAAAATTGAGTGTGAAAGGAAGCCTGGGCAATTGATAAAGGTGATTGTTGCTTTGGAGGATCTTAGGCTAACCATTCTGCATCTCAACATCACATCTTCTGAAGCTTCTGTCATCTACTCCCTCAATCTCAAGATTGAAGAAGACTGTATGCTAGGTTCAGCAAATGACATTGCAGAAGCAGTTCATCATATATTAAGCATTATTAATGGTAGCTAA 1140 0.4132 MMERLQGPINSCFFGEHLEVNCLEQALVEAESLRLEEEQHLLISTLEDNMPFLQMLQSVEYHPQQFFPLKEPSFQTLLRLQHLKKPWELENQTQAQAAFEQLESCVTHDMLEMQSPVKSESNYELQQQQHTHSASCVEKLSYECNQEEPLKTEQSCLKSQHATRERRKRKRTRLTKNKEDVENQRMTHIAVERNRRRQMNDHLSVLRSLMPPSYIQRGDQASIIGGAIDFVKELEQLVQSLESQKRMRKNEEACSSSSVFSKPPSDSSPSHGFGMRSSSSTEGDEVKAENKSESADIKVTLIQSHVNLKIECERKPGQLIKVIVALEDLRLTILHLNITSSEASVIYSLNLKIEEDCMLGSANDIAEAVHHILSIINGS* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1690 379 PANTHER MAX DIMERIZATION, MAD 19 378 - -
Lja3g1690 379 PANTHER TRANSCRIPTION FACTOR BHLH70 19 378 - -
Lja3g1690 379 MobiDBLite consensus disorder prediction 253 281 - -
Lja3g1690 379 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 183 234 IPR011598 GO:0046983
Lja3g1690 379 Coils Coil 231 251 - -
Lja3g1690 379 Gene3D - 174 251 IPR036638 GO:0046983
Lja3g1690 379 CDD bHLH_AtFAMA_like 186 259 - -
Lja3g1690 379 MobiDBLite consensus disorder prediction 246 291 - -
Lja3g1690 379 Coils Coil 164 184 - -
Lja3g1690 379 MobiDBLite consensus disorder prediction 151 185 - -
Lja3g1690 379 Pfam Helix-loop-helix DNA-binding domain 184 235 IPR011598 GO:0046983
Lja3g1690 379 SMART finulus 189 240 IPR011598 GO:0046983
Lja3g1690 379 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 183 251 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1690 Lja-Chr3 18744081 18746975 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1690 55 373 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46810 41.209 2.10e-72 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja3g1690 HLH 3.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1690 - - gmx:100789928 541.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1690 3 18744081 18746975 Lja3g1690 3 18744081 18746975 ECH