Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1689 ATGGATAATTCACAAGAAGAAGATGGCATTGTTTTTTCCATGAACATGATGTCATCTATGGTGTTACCATTGGCAGTTCGATCGGCAGTTGAGCTGGGCATCTTTGACATTCTAGGGAAAGAAGGTGAAGGAATGAAGCTCTCTGCAAAAGACATTGCGGTTAAGTTGGGCTCAAAGAACCCAGAAGCACCCGCAATGCTGGACCGTGTTCTGAGACTATTGGCTTGTCACTCCATGCTATATTGTTCACTTTCTGAAGATCAACATGGGCCTGCATCTCCTCAGAGGCTTTATGGGCTTGCTCCCAGGTCCAAGTATTTTGTGACTGATGCTGATGGTGTGACATTTGGGCCTGCTTTGCACTTAAATCTTGACAAGGTCCTCATGGAAAGCTGGACCGATTTGAGAGGAGCAATTATGGAAGGAGGCACTCCATTCAACAGGGTTCATGGCAGGCATTTATATGAGTATGCAGGTTCCGATCCCAGGTTAAATGATGTTTTCAACAAAGCTATGTCCAACATTACCATTATAATCATGAAGAGTATTCTTAAGTTTTATGAAGGTTTTGAGCACATCAATAGACTAGTGGATGTAGGTGGTGGTCTCGGGATAAATCTCAAATTGATCACTTCCAAATATCCTCATATCCAGGGTGTTAACTTTGATTTACCTCACGTCCTAGAGCATGCCCCTACATATGCAGGCGTGACACATGTAGGAGGAGATATGTTTGAGAGTGTTCCTAATGGAGATGCCATTTTTATGAAGTGGATACTTCACAATTGGAGTGATGAATACTGCTTGAAATTGATGAAGAATTGCCATAAAGCTACTCCAAATGATGGAAAAGTGATTGTTGTGGAGGAAGTTCTTTCTGTTTTGCCTGAGACAACAGTTGCTGCCAAGAGTGCTACCCAGGATGACCTCATAATGATGACTCAAATCCCAGGAGGAAAAGAGCGAACCCAAAACGAAATGACGGAATTAGCATTAGGATCTGGATTTAGTGGCGTTAGATTCGTATGTTGTGTCTCCGGCTTCTGGGTTATGGAGTTTTATAAGTAG 1068 0.427 MDNSQEEDGIVFSMNMMSSMVLPLAVRSAVELGIFDILGKEGEGMKLSAKDIAVKLGSKNPEAPAMLDRVLRLLACHSMLYCSLSEDQHGPASPQRLYGLAPRSKYFVTDADGVTFGPALHLNLDKVLMESWTDLRGAIMEGGTPFNRVHGRHLYEYAGSDPRLNDVFNKAMSNITIIIMKSILKFYEGFEHINRLVDVGGGLGINLKLITSKYPHIQGVNFDLPHVLEHAPTYAGVTHVGGDMFESVPNGDAIFMKWILHNWSDEYCLKLMKNCHKATPNDGKVIVVEEVLSVLPETTVAAKSATQDDLIMMTQIPGGKERTQNEMTELALGSGFSGVRFVCCVSGFWVMEFYK* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1689 355 Pfam O-methyltransferase domain 132 337 IPR001077 GO:0008171
Lja3g1689 355 Gene3D Vaccinia Virus protein VP39 108 355 IPR029063 -
Lja3g1689 355 Gene3D - 1 107 IPR036388 -
Lja3g1689 355 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 14 355 IPR016461 GO:0008168
Lja3g1689 355 PIRSF O-mtase 1 355 IPR016461 GO:0008168
Lja3g1689 355 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 113 354 IPR029063 -
Lja3g1689 355 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 7 355 - -
Lja3g1689 355 PANTHER O-METHYLTRANSFERASE 7 355 IPR016461 GO:0008168
Lja3g1689 355 Pfam Dimerisation domain 25 75 IPR012967 GO:0046983
Lja3g1689 355 SUPERFAMILY "Winged helix" DNA-binding domain 4 110 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1689 Lja-Chr3 18726884 18730150 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1689 6 355 Monolignol Biosynthesis Gene Families AT5G54160 50.708 3.78e-130 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1689 K13066 - gmx:100789402 531.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1689 3 18726884 18730150 Lja3g1689 3 18726884 18730150 ECH