Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1685 ATGGATGCGGCGGACTCCTCTAGCGAAGAAGTGATTGTTAAGACAAGAAAGCCATATACAATCACAAAGCAAAGAGAACGATGGACGGAGGAGGAGCATAATAGGTTTCTCGAAGCTCTGAAGCTACATGGGCGAGCATGGCAGCGCATAGAAGAGCATATAGGAACAAAGTCTGCTGTGCAAATCAGGAGCCATGCACAGAAGTTCTTTACTAAGTTGGAGAAAGAGGCCCTGGTGAAGGGTGTTCCAATTGGACAAGCTATTGATATTGACATTCCCCCTCCAAGGCCTAAAAGAAAACCAAGCAATCCTTATCCTCGGAAGTCGAGTGCTGTCACTGCAACATTACAAAGTGGAGAAAAGGATGTAAAACTCAATTCAGTGGAATCTTCGCATGTTGAATCTTCGCATGTTAAACTAACACTGGACTTGGAAAAAGAGCCACTTCCAGAGAAACATAATGTAGACGAAGGTCCAACAACTGTAAAAGAAAATAAGGACGGAGACCACTTAGAAGTATTTACTGTTGGCCCAGATGTACCTTATTCCTCTGTATCTTCAGCAAACAAGAGTTCAGTATCAACGTCAGTGCCTTGGGGAAGTTCAGGCGCTTTAAAGGAGATTACGCCTTCACTGAAAGAGGTAATAGCACTAGATGGAACAAATGAATCTTTTATCACTATTGAACTTGGAAATCGAAAGTTGGCGACCAATGATGGAAAACAGACTAATGGCTGTAGTAAAGACTCCAAGTTGGAGGATTCTGAAGCTTCACAAGTGAAATTGGTTCAAAGTGAGAAAACAGATGGTCTTAATTGTGCATTTACAATAGATGGAATGCAGAGCAATCAGAATTACCCTAGACATGTTACTGTGCAAGTTTTTGATGGGAATGTAAGCACAAACACTCAAAATCCATCTCAAGATATGCGGTTACGAGACTCCATATTTCAGCCAATAGGAGAGGTTAATGGGCAACCTAAGGTTTTTACCAATTCAGCTGCATCAAACACAGGGGAAAGTCAAAGTAACACAGGACAATCGTCTATTCACCAATCATTTCTTCCTTATCCTCCCTTCACACAACATAATCAAGATGATTACCAATCATTTATTCACATGTCCTCCACATTTTCAAGCCTTGTTGTCTCTAACTTGCTGCAAAATCCAGCAGCTCATGCTGCAGCAAGTTTTGCTGCTACATATTGGCCCCATGCACGCCCAGAAACTTTAGCAGATTCTTCTAGGTGCTCCGAAGGAGGTTTTCCATGTAGGCAAATGGGCTCTCCTCCAAGTATGGCAGCTATTGTAGCTGCTACTGTTGCTGCTGCAACTGCATGGTGGGCAACTCATGGATTGCTTCCTATGTGTGCTCCTCCCCATACTGCTTTTGCCTTCCCTCCTGCATCAGTGACTGCTGTTCCATCAGTGAATACTGATGAAGGACCAGCGTCGGAGATAGAGCAAGGAAATACTTATATACAAAATCCTCCTCAGCAAGGTCAGATACTGGATCCAGAACACTCTGAAGCTCAACAAACTCAACATTCAGCTTTGAAGTCACCAACTATTACATCATCAGATTCTGAGAATGGAGATGCCAAGTTACATACTTTATTGAAGGCTACTGATCATGAGATGAAAGAAGTTTCTCAGCACCTTGATTCCAATATAACGAAGGGCAAAACCCTGGTTGACCGTTCCTCATGTGGTTCCAACACCTCTAGTAGCGATTTGGAGACTGATGCATTAGAAAAGGATGAGAAAGGGAAGGAAGAGCTTGAAACTCTTGATGCTAACCTTTTAGCTGCTGAGTTTATTAACCGTCGTTATAGAACTGTTAGCAACCTTACTGATTCTTGGAAGGAGGTTTCTGAAGAGGGGCGAGTGGCCTTTCGGGCTCTATTCTCCAGACAGGTGCTGCCTCAAAGCTTTTCACCTCCACAGAATTTGAAAAATAAGGATCATCAATTGGACAACATCATGGACGACAAGCTAAACACAGATGACAAAGATAAAGACGACGTTGACCGCCAGAAATGCAGTTCTAGTTATGAAGGAATGCAGAAAAACCTGCCATTCTTTGAAATTAACGAGGAAGGACAGGTAACCATTGGGCTTGAACAAGGAAAGCTCAATACTCGTCGAACAGGCTTTAAGCCCTACAAAAGATGTTCCATGGAGGCCAAGGAAAACCGGGTTGGTACGACCAGCAACCAAGGTGATGAGAAAGGTTGTAAGAGAATACGTTTGGAAAGAGAGGCTTCAACTTGA 2274 0.4305 MDAADSSSEEVIVKTRKPYTITKQRERWTEEEHNRFLEALKLHGRAWQRIEEHIGTKSAVQIRSHAQKFFTKLEKEALVKGVPIGQAIDIDIPPPRPKRKPSNPYPRKSSAVTATLQSGEKDVKLNSVESSHVESSHVKLTLDLEKEPLPEKHNVDEGPTTVKENKDGDHLEVFTVGPDVPYSSVSSANKSSVSTSVPWGSSGALKEITPSLKEVIALDGTNESFITIELGNRKLATNDGKQTNGCSKDSKLEDSEASQVKLVQSEKTDGLNCAFTIDGMQSNQNYPRHVTVQVFDGNVSTNTQNPSQDMRLRDSIFQPIGEVNGQPKVFTNSAASNTGESQSNTGQSSIHQSFLPYPPFTQHNQDDYQSFIHMSSTFSSLVVSNLLQNPAAHAAASFAATYWPHARPETLADSSRCSEGGFPCRQMGSPPSMAAIVAATVAAATAWWATHGLLPMCAPPHTAFAFPPASVTAVPSVNTDEGPASEIEQGNTYIQNPPQQGQILDPEHSEAQQTQHSALKSPTITSSDSENGDAKLHTLLKATDHEMKEVSQHLDSNITKGKTLVDRSSCGSNTSSSDLETDALEKDEKGKEELETLDANLLAAEFINRRYRTVSNLTDSWKEVSEEGRVAFRALFSRQVLPQSFSPPQNLKNKDHQLDNIMDDKLNTDDKDKDDVDRQKCSSSYEGMQKNLPFFEINEEGQVTIGLEQGKLNTRRTGFKPYKRCSMEAKENRVGTTSNQGDEKGCKRIRLEREAST* 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1685 757 MobiDBLite consensus disorder prediction 89 130 - -
Lja3g1685 757 Gene3D - 27 74 - -
Lja3g1685 757 SUPERFAMILY Homeodomain-like 19 75 IPR009057 -
Lja3g1685 757 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 74 IPR017930 -
Lja3g1685 757 PANTHER PROTEIN LHY 5 739 - -
Lja3g1685 757 Pfam Myb-like DNA-binding domain 25 68 IPR001005 -
Lja3g1685 757 MobiDBLite consensus disorder prediction 663 683 - -
Lja3g1685 757 MobiDBLite consensus disorder prediction 327 356 - -
Lja3g1685 757 MobiDBLite consensus disorder prediction 663 681 - -
Lja3g1685 757 ProSiteProfiles Myb-like domain profile. 20 70 IPR001005 -
Lja3g1685 757 PANTHER SWI/SNF COMPLEX-RELATED 5 739 - -
Lja3g1685 757 MobiDBLite consensus disorder prediction 729 757 - -
Lja3g1685 757 MobiDBLite consensus disorder prediction 556 579 - -
Lja3g1685 757 MobiDBLite consensus disorder prediction 145 165 - -
Lja3g1685 757 ProSiteProfiles SANT domain profile. 23 74 IPR017884 -
Lja3g1685 757 CDD SANT 27 70 IPR001005 -
Lja3g1685 757 SMART sant 24 72 IPR001005 -
Lja3g1685 757 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 23 72 IPR006447 GO:0003677
Lja3g1685 757 MobiDBLite consensus disorder prediction 743 757 - -
Lja3g1685 757 MobiDBLite consensus disorder prediction 550 591 - -
Lja3g1685 757 MobiDBLite consensus disorder prediction 106 130 - -
Lja3g1685 757 MobiDBLite consensus disorder prediction 476 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1685 Lja-Chr3 18670543 18678096 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja3g1685 Myb_DNA-binding 3.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1685 K12133 - gmx:100271888 1014.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1685 3 18670543 18678096 Lja3g1685 3 18670543 18678096 ECH