Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1680 ATGGAACTGATCCAAGAAGAAGCAGTGAAAGGTTATTCTGATAGCAGAGAAGAAGAGGAAGAAGAAGAAGAAGAAGAGGAAGAAGAAGAAGCAGGTGAAGAAGGAATCATCACAACAACAAGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGCAGCAGGTTCTTGTTACACCAAGATGGAGCATCAGCATCAGCACCAACAACATCCAATTTCACCACCAATCACACAACAAAACAGCTAGATTTCATGGAATTATCACTTGGAAACAACCAAAATCTCTCTGATGAACCCAATTTTCAACAACAACAACAACAAGGATCACTATCTGCTTCAGCTCCTCCTCCTCTTTATGGCCATGCAAGTGGTGGTGCTAGTTCTTCAGCAAACCAGCAACAACAACCCATTGAGAAAGAGCACATGTTTGACAAAGTCGTGACGCCGAGCGATGTGGGGAAGCTGAACCGATTAGTGATACCAAAACAGCACGCTGAGAAGTACTTCCCTCTCGATTCCGCCTCGAATGAGAAGGGGCTACTTCTCAATTTCGAGGACCGGAATGGGAAGCTCTGGCGGTTCCGGTACTCGTACTGGAACAGCAGCCAGAGCTATGTGATGACAAAAGGATGGAGCCGGTTTGTGAAGGAGAAGAAGCTTGATGCCGGCGACATTGTCTCGTTCCAGCGCGGTGTCGGGGACTTATGCCGGCACAGGTTGTACATAGATTGGAGGAGAAGGCCTGATCATCATCTCCCTGATCCTTCATCAGCAGCACTCTTCACACCTTTCTTTCTTCCTCCCAATCATCATCACCAACCACACTTGTCACAGTACTCAATCAGGTGGGGTGGTGCTAATAGCAGATTCTATTCCCCACCACAGCCGCCGCGCCACCACCTCCACCATGACCCTCTGCAGCAGCAGCAGCTCAATTACAACCACCACATGTATCAACATCATCATCATCCATTTCACCCCTACCATGAGCTGAACTCAGGATCTGGGTCAATCTATTACCTGAGATCAGCACCATCAATGTCAATAGCTGATCATCAAACCTTAGCAAGACAACAACAACAACATCAAGAAGGAGGAGGAATCAGCAGCAATATTGCCCCCATGATAATTGATTCTGTTCCAGTTGGGCATCATCACCACCACCACCACCACCAACACGGCGGTAGCGCTGGCATTAGTAGTAGTACTAGTAGTAGTAACACTGCAGCAAAAAGGTTAAGGCTATTTGGGGTGAACATGGAATGTGCTTCTTCTTCATCTTCATCTTTACCTTCTCCTTCTCTACCACAGAATTTGAGGGTGCCTCATGAAGACAGTACAATTTCACAATCATCAGCAAGGTTTGGGATTGGGGATCTCCAGAGAGGGGAGGCTTCAGTGCTTTTTGATTTGGACCCATCTTTGCAGTATCGGCAGTGA 1437 0.4676 MELIQEEAVKGYSDSREEEEEEEEEEEEEEAGEEGIITTTREEEEEEEEEESSRFLLHQDGASASAPTTSNFTTNHTTKQLDFMELSLGNNQNLSDEPNFQQQQQQGSLSASAPPPLYGHASGGASSSANQQQQPIEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSASNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGDLCRHRLYIDWRRRPDHHLPDPSSAALFTPFFLPPNHHHQPHLSQYSIRWGGANSRFYSPPQPPRHHLHHDPLQQQQLNYNHHMYQHHHHPFHPYHELNSGSGSIYYLRSAPSMSIADHQTLARQQQQHQEGGGISSNIAPMIIDSVPVGHHHHHHHHQHGGSAGISSSTSSSNTAAKRLRLFGVNMECASSSSSSLPSPSLPQNLRVPHEDSTISQSSARFGIGDLQRGEASVLFDLDPSLQYRQ* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1680 478 MobiDBLite consensus disorder prediction 89 135 - -
Lja3g1680 478 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 43 441 - -
Lja3g1680 478 ProSiteProfiles B3 DNA-binding domain profile. 142 247 IPR003340 GO:0003677
Lja3g1680 478 MobiDBLite consensus disorder prediction 1 74 - -
Lja3g1680 478 MobiDBLite consensus disorder prediction 351 370 - -
Lja3g1680 478 SUPERFAMILY DNA-binding pseudobarrel domain 139 246 IPR015300 -
Lja3g1680 478 MobiDBLite consensus disorder prediction 58 74 - -
Lja3g1680 478 SMART B3_2 142 247 IPR003340 GO:0003677
Lja3g1680 478 MobiDBLite consensus disorder prediction 351 367 - -
Lja3g1680 478 MobiDBLite consensus disorder prediction 89 112 - -
Lja3g1680 478 CDD B3_DNA 140 229 IPR003340 GO:0003677
Lja3g1680 478 Gene3D - 136 252 IPR015300 -
Lja3g1680 478 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 43 441 IPR044800 GO:0003700
Lja3g1680 478 MobiDBLite consensus disorder prediction 382 405 - -
Lja3g1680 478 MobiDBLite consensus disorder prediction 424 453 - -
Lja3g1680 478 MobiDBLite consensus disorder prediction 16 51 - -
Lja3g1680 478 Coils Coil 9 36 - -
Lja3g1680 478 Pfam B3 DNA binding domain 142 246 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1680 Lja-Chr3 18583092 18585260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1680 133 428 RAV Transcription Factor Family AT2G46870 47.855 3.11e-77 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja3g1680 B3 6e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1680 - - lja:Lj3g3v2520080.1 726.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1680 3 18583092 18585260 Lja3g1680 3 18583092 18585260 ECH