Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1679 ATGGATTACAACATACACATACCCGTTGGATTCAAATTCCATCCTACAGAGGAAGAGCTCATAAGTCACTACCTCAAGCCCAAGTTGGAGGGTGATGATATCAACATCATTCCTGAGATTGAACTTAGCAATGTTGAGCCTTGTGATATTCCAGCCCTTTCGTTGATAAAGACCGACAAACCAGAATGGTTTTTCTTCAGTCCTATTCCTCTTGGCAGTAAACAGCTTAGAAGGGCAACCAGGTTTGGGTACTGGAAATCTCATGGACATGACAGTGTAGTCAACGAAACGGGCACCAACAATGTCATTGGGTACAAGAAGATTCTTGCTTTCTATGAAGGCCGCCGCAACCGCAAGAATGAGACCATAATCAACTGGAGGAGCTTTGTTTTATGTCACTTGATGAAGAACGCTGACAGGAAAACTCAATGGGGGACCGGTGCATTGACATGTGATAAAGGGGAGACCAGTAGACGCGCTATTTCTGACTGTAAAAACAAACCTGTAGAAGAAGGGATACCAAATGTACATGGTCTTTTGCCAGAAGTGAATACGGATTCAATCGTTCCGACATGGCATCAGGAACAATCTTACAATGCCAATCCTAGAAATGAAAACAGCAGTAGACAGACTCCATTTGAATATACAGAAGGGATTAAAGATGTAGGTAAACGCATTTTTCTAATACTAGATTACATACCCAAGGGATTCCGATTCCGTCCAAGAGAGGAAGAGCTCGGTGATGATGCCTCTGTGATCAACATCATCCCTGAGATTGAACTCTGCTGTGTTGAGCCTAGTGATATTCCAGCCCGTTGTTTGATAAAGACCAATGGACGAGAATGGTTTTTCTTCAGTCCTCTTCATTACATGAATGCTGGTAAAAGTAAACGGGTGAAGAGGGAAACCGAGAGAGGGTTCTGGAGAATCACTGGAAATGACACTGTAATCATGGAAACGGGCACCAACAATGTCATTGGGACAAGGAAGGCTCTTCATTTCCATGAAGGCCGCCGCAAGAATGAGACCATAACCATCTGGGCTATGCATGAGTATCATGCTGCTGCTACCTCAGATCATGCCCATCAGAGGAACTTTGTTTTATGTCGCTTGATGAACACAGAAGAGAAGAAAACTCAACAGGGAACCGGTGCATTAATATGTGATAAAGGGGAGCCTAGTAGACACAAGGCTTCTGACTGTAAAAACAAAGCTGCAGAAGAAGGGATTCCAGATGTACATGGTCTTTTGCCAGAAGTGAATACGGATTCAATCGTTCCGACATGGCATCAGGAACAGTCTTACAATTCTAGTTCTAGAAATGAAAACAGCAGTAGTCAGACTCCATTTGTATATACAGAAGGGATTACAGATGCATTTGGTAGTTTTCCTGAAATGAATGAGGAATCAATCCTTCAGATAATGGATCAGAAAGTATGCCCCTCAATCCAACAGTCCCGGGATATCTTTGATGAGGAAGTGTTTCTCCCAAAGCTTCCATCTCACAATGCCAATTTTAGAAATGAAAATAGCAGTAGGCAGGCTCCAGTGGAAATTACTGAAGAGGAAGATGAGTATTTGAATTCAGATGTTCCAGATGGGAAATTTGTTTTCACCGAAAAAAGAAGAAACGCTTTTGTGAAGTGTTCCACACAGCCCTCATTGAGAAGGGTTTACTATGAAAGCAGTGACACAGATGCTGAAGTAGTCTCTGCACTGTGTTTCAATATTGTGGATACTTCAACAGTGCGTGACGATCATCCTAGTTCAGGTGAATATCATGCATCAAAAATGTATAAATCCTCACATGGAGTGAAGGCATCATCCTGTGACTCAACTGCAGATGAAGCATTGAAGATCAATTGTATTGGAAATTCTGGTTCTCTTTCTCAAAGGAGATGGAAATATCAGTATCATACCAAACCATTCATATCACAAAGATCTGCTGCCAGGTATCAATATCAACCACAGAGGAAGCTTTCAGGCAATGCAGTATCCAATCTTGAGAAGCCAGAAAAGGATCACGTGATAGCTCGAAATAGTAGTTCAAGAAAGAATTCAGAAACCAGAAACCATCAATCCTCTAATGTCAACAGAGAAGGTTCTTTCATCTGCCAGGAGACCGCTTCATCAAGCCCAAGCCTATTTCTTCTTCTTGCTAACATAGTTTTAGGGATTTTGTTCTTCATGTTGTGCACAGTTATTTGTTTGGAACTGTTATCATATTAG 2229 0.4181 MDYNIHIPVGFKFHPTEEELISHYLKPKLEGDDINIIPEIELSNVEPCDIPALSLIKTDKPEWFFFSPIPLGSKQLRRATRFGYWKSHGHDSVVNETGTNNVIGYKKILAFYEGRRNRKNETIINWRSFVLCHLMKNADRKTQWGTGALTCDKGETSRRAISDCKNKPVEEGIPNVHGLLPEVNTDSIVPTWHQEQSYNANPRNENSSRQTPFEYTEGIKDVGKRIFLILDYIPKGFRFRPREEELGDDASVINIIPEIELCCVEPSDIPARCLIKTNGREWFFFSPLHYMNAGKSKRVKRETERGFWRITGNDTVIMETGTNNVIGTRKALHFHEGRRKNETITIWAMHEYHAAATSDHAHQRNFVLCRLMNTEEKKTQQGTGALICDKGEPSRHKASDCKNKAAEEGIPDVHGLLPEVNTDSIVPTWHQEQSYNSSSRNENSSSQTPFVYTEGITDAFGSFPEMNEESILQIMDQKVCPSIQQSRDIFDEEVFLPKLPSHNANFRNENSSRQAPVEITEEEDEYLNSDVPDGKFVFTEKRRNAFVKCSTQPSLRRVYYESSDTDAEVVSALCFNIVDTSTVRDDHPSSGEYHASKMYKSSHGVKASSCDSTADEALKINCIGNSGSLSQRRWKYQYHTKPFISQRSAARYQYQPQRKLSGNAVSNLEKPEKDHVIARNSSSRKNSETRNHQSSNVNREGSFICQETASSSPSLFLLLANIVLGILFFMLCTVICLELLSY* 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1679 742 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 236 671 - -
Lja3g1679 742 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Lja3g1679 742 SUPERFAMILY NAC domain 6 127 IPR036093 GO:0003677|GO:0006355
Lja3g1679 742 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 9 213 - -
Lja3g1679 742 MobiDBLite consensus disorder prediction 663 695 - -
Lja3g1679 742 PANTHER NAC DOMAIN CONTAINING PROTEIN 49 236 671 - -
Lja3g1679 742 ProSiteProfiles NAC domain profile. 233 374 IPR003441 GO:0003677|GO:0006355
Lja3g1679 742 Pfam No apical meristem (NAM) protein 234 353 IPR003441 GO:0003677|GO:0006355
Lja3g1679 742 Pfam No apical meristem (NAM) protein 8 120 IPR003441 GO:0003677|GO:0006355
Lja3g1679 742 SUPERFAMILY NAC domain 230 373 IPR036093 GO:0003677|GO:0006355
Lja3g1679 742 Gene3D NAC domain 241 379 IPR036093 GO:0003677|GO:0006355
Lja3g1679 742 Gene3D NAC domain 16 145 IPR036093 GO:0003677|GO:0006355
Lja3g1679 742 PANTHER NAC DOMAIN CONTAINING PROTEIN 49 9 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1679 Lja-Chr3 18564363 18568728 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1679 230 373 NAC Transcription Factor Family AT4G35580 37.975 7.18e-23 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja3g1679 NAM 1.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1679 - - gsj:114390609 330.102