Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1678 ATGGGTGGAGGCACTTTTCAAATGCTGGATTTGTTACCTGTGGGATTCAGGTTCCAACCAACAGATAAAGAGCTTGTGTACCTCAAACACAAGTTGCATGGTGATGATTCAGATTCCCTTGTTGCCAACATTCCTGTGCTTGATCTTTGTAAGGTTGAACCTTGGAATATTCCAGCCTTTTCGGTGATAAAGTCAGATGAAGCAGAATGGTATTTCTTCAGTCCTCTCCATTCCAACAGGGTAACCAGACATGGGTTCTGGAAATACGTTGGAAGTGACCGTAACATCAAGACAACTCGCACCAACATTGTCATTGGGACCAGGAAGACTCTTGTTTTCTGTCGAGGCCGGGTCGAGACCGACTGGGTTATTCATGAGTATCATGCTGCTGCTACCATTGATGATGCCCAGAGGACCTTTGTTTTATGTCGCTTGATGGGGAGCGCAAAGAAGAAAGCTGCATTGATATGTGAAGAAAGGGAGTTCAGTAGACTTGAAGACATGGCTTCTGACCATGAAAGTGAAGATGCAGAATCAGAAGGGATTACAGATGTATGTGATGTTTTGCCAGAAGAGAATATGGATTCAATCTTTCAGACACCGCAACAGGAACTATCTCACAATGCCAATTTTAGAAATGAAAACAGTAGCAGACAGACTCTGGAAGATAAGTTTTTGAATTCAATTTCTTCCAAGGATTTTGTTAGAAGTGAAGAAAAGAGACACGCTTTTGTGAAGGATTTCACCCAACCAGAATCATTGAGAAGGCCCTTCAGAACCATGCACACCCTCAGAAGGGTAAACTCTGAAAGCAGTGAGACAGATGCTGAAGTAGTCTCTGCACTGATTAAGAAGGAATTTACCATTGAAGTATCAGAAAAGAGTCGTCAGGCGATAGCTCGAAATAAAAGTTCAAGAGACAATTCAGAAACCAGAAGCCATCAATCCTCTAATGTCAACAGAAAGGTTTCTTTCATCTTCCCAGAGACATCTTCATCAAGCCAAAGCCTGTTGCCTGACACGGTATATCTTGTTAACATAGTTATAGGGATTATGATCTTCATAGTTATTAGTTTGGATGTGTTATCATATGTGAAAGGCTGGTGA 1107 0.4182 MGGGTFQMLDLLPVGFRFQPTDKELVYLKHKLHGDDSDSLVANIPVLDLCKVEPWNIPAFSVIKSDEAEWYFFSPLHSNRVTRHGFWKYVGSDRNIKTTRTNIVIGTRKTLVFCRGRVETDWVIHEYHAAATIDDAQRTFVLCRLMGSAKKKAALICEEREFSRLEDMASDHESEDAESEGITDVCDVLPEENMDSIFQTPQQELSHNANFRNENSSRQTLEDKFLNSISSKDFVRSEEKRHAFVKDFTQPESLRRPFRTMHTLRRVNSESSETDAEVVSALIKKEFTIEVSEKSRQAIARNKSSRDNSETRSHQSSNVNRKVSFIFPETSSSSQSLLPDTVYLVNIVIGIMIFIVISLDVLSYVKGW* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1678 368 PANTHER NAC DOMAIN CONTAINING PROTEIN 49 14 322 - -
Lja3g1678 368 MobiDBLite consensus disorder prediction 298 317 - -
Lja3g1678 368 Gene3D NAC domain 21 153 IPR036093 GO:0003677|GO:0006355
Lja3g1678 368 ProSiteProfiles NAC domain profile. 12 148 IPR003441 GO:0003677|GO:0006355
Lja3g1678 368 Pfam No apical meristem (NAM) protein 13 128 IPR003441 GO:0003677|GO:0006355
Lja3g1678 368 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 14 322 - -
Lja3g1678 368 SUPERFAMILY NAC domain 8 146 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1678 Lja-Chr3 18560361 18562969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1678 9 185 NAC Transcription Factor Family AT3G49530 42.564 6.97e-39 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja3g1678 NAM 2.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1678 - - lja:Lj6g3v1983320.1 306.219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1678 3 18560361 18562969 Lja3g1678 3 18560361 18562969 ECH