Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1675 ATGGCTTCAGCGTGTGCTTCCTCTGCCATTGCAACTCTTGCAATCTCTACCCCAAGCTCCCAGAAGAATGGATCACCCTTGGGAACTACAAAAGCTTTCCTTAGTGGAAGGAAGCTGAAGGTGAACACCTTTACAGCACCAGTTGGGGCAAGATCCACCACTACAGTGTGTGCAGCAGCTGAACCTGATAGGCCTCTGTGGTTCCCAGGAAGCACCCCTCCTCCATGGCTTGATGGCAGTCTCCCAGGAGATTTTGGGTTTGATCCTCTTGGTCTTTCATCTGATCCGGAGAGCCTGAGATGGAATGTCCAAGCAGAGCTTGTCCACTGCAGATGGGCAATGTTGGGTGCTGCTGGCATTTTCATCCCAGAATTTCTAACAAAGATTGGTATCCTGAACACCCCTTCATGGTACACTGCTGGAGAGCAGGAGTATTTCACAGACACCACCACCCTCTTCATAGTTGAGCTCATTTTCATTGGCTGGGCTGAGGGTAGAAGGTGGGCTGACATCCTCAAGCCAGGCTCTGTCAACACTGACCCTATCTTCCCCAACAACAAGCTCACAGGAACAGATGTTGGGTACCCAGGTGGGCTTTGGTTTGACCCACTTGGTTGGGGAAGTGGTTCTCCTCAGAAGCTCAAGGAGTTGAGAACAAAGGAGATCAAGAATGGGAGACTAGCCATGTTGGCTGTGATGGGTGCTTGGTTCCAGCACATTTACACTGGCACTGGTCCTATTGACAACCTCTTTGCCCACCTTGCTGATCCTGGCCATGCCACTGTTTTTGCTGCTTTCACTCCCAAGTGA 810 0.5099 MASACASSAIATLAISTPSSQKNGSPLGTTKAFLSGRKLKVNTFTAPVGARSTTTVCAAAEPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELIFIGWAEGRRWADILKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1675 269 Pfam Chlorophyll A-B binding protein 73 239 IPR022796 -
Lja3g1675 269 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 269 - -
Lja3g1675 269 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 269 IPR001344 GO:0009765|GO:0016020
Lja3g1675 269 SUPERFAMILY Chlorophyll a-b binding protein 62 267 - -
Lja3g1675 269 Gene3D Chlorophyll a/b binding protein domain 74 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1675 Lja-Chr3 18530870 18532551 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1675 45 269 Chloroplast and Mitochondria Gene Families AT3G61470 89.823 6.23e-152 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1675 K08908 - gmx:100802138 520.776