Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1671 ATGTCTTCTTCTAATTCCCCTGCATATTCCACTTGGAAACACAATAATAACATGGTTTCCATTTTGATCATAGTGCCTTTACTTCTGTCGTTATTAGTTGTTCAAGCCTCATCCCTTTGTAACCAGATTGATAAAGACTCCCTCTTGGCTTTCTCTGGGAACATATCTACCTCTTCCCCTCACCCTCCTCTCAATTGGTCTTCTTCTTCTTCTTCTTCCCCTGATTGCTGTGATTGGGAAGGTGTTACTTGTGATGGGGATCAACGTGTTACTCATCTTTTGCTACCATCTAGAGGTCTCTTTGGAGTTATCTCCCCATTTCTCACCAACCTAGCAGCTCTCTCTCATCTCAATCTTTCTCATAATAGATTATCTGGGAATCTTCAGAGCCAGTTCTTCTCACTGCTGAATCACCTTCTGGTTCTTGATTTGAGCTACAATCGCCTCTCTGGTGAGTTGCCACCCTTTGTTGCTGATAATAGTACTAGTTTTGTTATCCAGGAGGTGGACTTGTCTAGTAATTTGTTCAATGGAACGCTCCCATCTTCATTGCTTCAGCACCTAGCAGGAGGGAGTTTGATATCTTTCAATGTCAGCAACAACAGTTTCACAGGTTTCAATTTTCTATCCGGGCCTATTCCTGTTGATATTTTTGATGCTGTCTCTCTTAAAGAAATATCATTGCCCCTCAATAAGCTCACTGGAACAATTGGTGATGGCATTGTTAGCCTCACCAATCTCACAGTTTTGGAGCTTTACTTCAATCATTTCACAGGTCCTATTCCCCGGGATATCGGTAGCCTTTCCAAATTGGAACGGTTGCTTCTCCATGTCAACAATCTCACAGGTACTATGCCCCCATCTCTGATGAACTGTGGCAATCTTGTGGTATTGAATTTAAGGGTCAACAAGTTGATGGGGAATCTCTCAGATTTCAATTTCTCTGGATTCCTCAGACTTGCTACACTTGACCTTGGCAACAATAATTTCACTGGTGTTTTACCACCAACACTTTATGCATGCAAGTCACTTGCAGCATTAAGGCTAGCACATAATCAACTCGAAGGTCAGATTTCGCCCCAGATACTTGGACTCAAGTCTCTTTCTTTCCTATCAGTATCCAATAACAAGCTGATGAATATCACTGGTGCTCTGAGAATTCTCACAGGGCTCAAGAAACTTAGTACCCTTATGCTGCCCACTAATTTTTTGAATGAAATGATGCCACAGGATATAAACATAACAGGACAAGATGGATTCCAAAAGCTGCAGGTTCTCAGCTTGGGTGGTTGTCAATTTACTGGTCAAATACCAGGCTGGCTAGCACACCTGACGAAGATAAAGGCTCTGGACCTGTCCTTTAATAATTTTAGTGGTCCAATTCCTCCTTGGTTGGGTGCATTTCCTCAGCTTTTTTACATAGACTTGTCTTTTAACCTCCTTACTGGAACATTTCCGACGGAGCTGACAGGACTCCCGGCACTAACATCACAACAGGCAAATGATAAAGTAGAAAGGACTTATTTGGAGTTACCTGTCTTTGCTAATGTCTACAATGTTTCCTTGTTGCAATATAATCAGCTTTCTAGCCTTCCACCAGCATTGCATCTCGAAAACAATTGCCTTAGCGGCATCATCCCGATTGAGATTGGCAAACTGAGCATTTCAAACTTAACCAATTTAGAGAAACTAGACCTTTCTAGAAACCATCTATCTGGTGAAATTCCTGATTCACTCAAAAGATTGCATTTCTTGTCCTTTTTCAGTGTAGCATTCAATGATCTTCAAGGACAGATACCAACCCAAGGTCAATTTGATACTTTCTCCTTTTCCAGCTTTGACGGAAACACACTATTGTGTGGTTCAGTTATTCATCGCTCTTGTCCTTCTCAACAAAATACTAACAGTACTGCAGCTAGTGGCAGTTCAAACAAAAAAGTAATCATTGGAATTATCAGTGCAGCTTGCTTTGGCTTTTCTTCTTTGGTGACATTGTTGACACTATGGATACTCTCCAAGAGGAGGGTCAATCCAGGAGGAGCTTTGGACAAGATTGAACTGGAATCAATTGCTACCTACTCCATCAATGGGGTTCAGCCTGAGGTTGACAAGGTTGTCTTGTTTCCCAACAAAACTAATGAAACCAAGGATCTTACAATATTTGAGATCATAAAGGCTACTGAGAATTTCAGTCAAGCAAACATCATAGGATGTGGGGGTTTCGGTTTGGTTTATAAAGCAACATTACCGAATGGGACTAATCTAGCCATCAAGAAACTTTCAGGAGATTTGGGCCTTATGGAAAGGGAACTCAAAGCAGAAGTAGAGGCTCTGACAACAGCGCAACATGAGAATCTAGTGGCATTGCAAGGCTACTGCGTGCATGACAGTTTCCACCTTCTCATATACAATTACATGGAGAATGGAAGTCTGGATGACTGGTTGCACGAAAAGTCTGACGGTGCATCTCAGCTTGATTGGCCAACTCGTTTGAAGATCGCCCGAGGAGCAAGCTATGGTACATTAGGTTACATTCCCCCGGAGTACGGACAAGCATGGGTGGCTACTCTGAGAGGAGATGTCTACAGCTTCGGAGTCGTCTTGCTTGAGCTTCTCACTGGGAGGAGGCCCGTTGATGAAAGTAAGGTGAAAATGTCAAGGGAATTGGTTGGCTGGGTTCAACAGATGAGAAGTGAAGGAAGACAAGATCAAGTCTTTGATTCTTCTATAAGAGGAAAAGGCTTTGAAGGAGAGATGCTTCAGGTTCTGGATGTGGCCTGCATGTGTGTTAACCAGAATCCTCTCACGAGACCATGCATCAGAGAAGTTGTTGAAGGGCTCGAGAATGTAGGATCATCCAACCAACTAGGAAACAAAGACTAG 2883 0.4259 MSSSNSPAYSTWKHNNNMVSILIIVPLLLSLLVVQASSLCNQIDKDSLLAFSGNISTSSPHPPLNWSSSSSSSPDCCDWEGVTCDGDQRVTHLLLPSRGLFGVISPFLTNLAALSHLNLSHNRLSGNLQSQFFSLLNHLLVLDLSYNRLSGELPPFVADNSTSFVIQEVDLSSNLFNGTLPSSLLQHLAGGSLISFNVSNNSFTGFNFLSGPIPVDIFDAVSLKEISLPLNKLTGTIGDGIVSLTNLTVLELYFNHFTGPIPRDIGSLSKLERLLLHVNNLTGTMPPSLMNCGNLVVLNLRVNKLMGNLSDFNFSGFLRLATLDLGNNNFTGVLPPTLYACKSLAALRLAHNQLEGQISPQILGLKSLSFLSVSNNKLMNITGALRILTGLKKLSTLMLPTNFLNEMMPQDINITGQDGFQKLQVLSLGGCQFTGQIPGWLAHLTKIKALDLSFNNFSGPIPPWLGAFPQLFYIDLSFNLLTGTFPTELTGLPALTSQQANDKVERTYLELPVFANVYNVSLLQYNQLSSLPPALHLENNCLSGIIPIEIGKLSISNLTNLEKLDLSRNHLSGEIPDSLKRLHFLSFFSVAFNDLQGQIPTQGQFDTFSFSSFDGNTLLCGSVIHRSCPSQQNTNSTAASGSSNKKVIIGIISAACFGFSSLVTLLTLWILSKRRVNPGGALDKIELESIATYSINGVQPEVDKVVLFPNKTNETKDLTIFEIIKATENFSQANIIGCGGFGLVYKATLPNGTNLAIKKLSGDLGLMERELKAEVEALTTAQHENLVALQGYCVHDSFHLLIYNYMENGSLDDWLHEKSDGASQLDWPTRLKIARGASYGTLGYIPPEYGQAWVATLRGDVYSFGVVLLELLTGRRPVDESKVKMSRELVGWVQQMRSEGRQDQVFDSSIRGKGFEGEMLQVLDVACMCVNQNPLTRPCIREVVEGLENVGSSNQLGNKD* 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1671 960 Gene3D Transferase(Phosphotransferase) domain 1 836 959 - -
Lja3g1671 960 SUPERFAMILY L domain-like 419 620 - -
Lja3g1671 960 Pfam Protein tyrosine and serine/threonine kinase 842 946 IPR001245 GO:0004672|GO:0006468
Lja3g1671 960 Pfam Protein tyrosine and serine/threonine kinase 733 839 IPR001245 GO:0004672|GO:0006468
Lja3g1671 960 Pfam Leucine rich repeat 294 354 IPR001611 GO:0005515
Lja3g1671 960 ProSitePatterns Protein kinases ATP-binding region signature. 736 759 IPR017441 GO:0005524
Lja3g1671 960 PANTHER OS06G0692500 PROTEIN 205 840 - -
Lja3g1671 960 PANTHER OS06G0692500 PROTEIN 20 279 - -
Lja3g1671 960 Gene3D Phosphorylase Kinase; domain 1 696 805 - -
Lja3g1671 960 SUPERFAMILY L domain-like 55 489 - -
Lja3g1671 960 SUPERFAMILY Protein kinase-like (PK-like) 714 945 IPR011009 -
Lja3g1671 960 Pfam Leucine rich repeat N-terminal domain 44 85 IPR013210 -
Lja3g1671 960 Pfam Leucine Rich Repeat 560 582 IPR001611 GO:0005515
Lja3g1671 960 Gene3D Ribonuclease Inhibitor 207 314 IPR032675 -
Lja3g1671 960 Gene3D Ribonuclease Inhibitor 41 206 IPR032675 -
Lja3g1671 960 SMART LRR_typ_2 244 268 IPR003591 -
Lja3g1671 960 SMART LRR_typ_2 111 135 IPR003591 -
Lja3g1671 960 SMART LRR_typ_2 365 387 IPR003591 -
Lja3g1671 960 SMART LRR_typ_2 444 468 IPR003591 -
Lja3g1671 960 SMART LRR_typ_2 558 582 IPR003591 -
Lja3g1671 960 SMART LRR_typ_2 317 341 IPR003591 -
Lja3g1671 960 SMART LRR_typ_2 136 160 IPR003591 -
Lja3g1671 960 PANTHER OS06G0692500 PROTEIN 840 951 - -
Lja3g1671 960 PRINTS Leucine-rich repeat signature 139 152 - -
Lja3g1671 960 PRINTS Leucine-rich repeat signature 558 571 - -
Lja3g1671 960 Gene3D Ribonuclease Inhibitor 315 637 IPR032675 -
Lja3g1671 960 ProSiteProfiles Leucine-rich repeat profile. 560 582 IPR001611 GO:0005515
Lja3g1671 960 PANTHER LEUCINE RICH REPEAT KINASE 2 205 840 - -
Lja3g1671 960 PANTHER LEUCINE RICH REPEAT KINASE 2 20 279 - -
Lja3g1671 960 PANTHER LEUCINE RICH REPEAT KINASE 2 840 951 - -
Lja3g1671 960 ProSiteProfiles Protein kinase domain profile. 730 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1671 Lja-Chr3 18491714 18495090 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1671 17 665 Miscellaneous Gene Families AT1G17240 45.682 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Lja3g1671 PK_Tyr_Ser-Thr 1.4e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1671 - - gmx:100807989 1206.82