Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1670 ATGGATGGTCATGCCTACCCATATACCCTTGTGTCCTCCTTCTTCTTCTGCTCTCATGTCACTGTGATCAACACCACCAAAGACTCAATCTTGCCCTTCTGGGTATCTCTAGTTCTCATGAGATCAGCCTCAACCCTATTACCCTCTTTTTCTTGTAAATACAATTACATGGTTTCCAATTTGATTATTCTGCCTTTACTTTTCTCCTTGTTGGTTGTTCAAGCCTCATTAATTTGTAACCAGATTGATAGAGACTCACTCTTGGAATTTTCTGGGAATATATCTATCTCTTCCCCTTACCCTCCTCTCAGTTGGTCTTCTTCTTCTTCTTCCCTTGATTGCTGTGATTGGGAAGGTGTTACTTGTGATGGGGATCAACGTGTTACTCATCTTTTGCTACCATCTAGAGGTCTCTTTGGAGTTATCTCCCCATCTCTCACCAACCTAGCTGCTCTCTCTCACCTTAATCTTTCTCATAATAGATTATCTGGGAATCTTCAGAGCCAGTTTTTCTCACTGCTGAATCACCTTCTGGTTCTTGATTTGAGCTACAATCGCCTCTCTGGTGAGTTGCCACCCTTTGTTGCTGATAACAGTACTAGTGTTGTTATCCAGGAGGTGGACTTGTCTAGTAATTTGTTCAATGGAACGCTTCCATCTTCATTGCTTCAGCACCTGGCAGGAGGGAGTTTGATATCTTTCAATGTCAGCAACAACAGTTTCACAGGCCAAATCCCCACTTCAATCTTTTGCACCAATGACCGCAACTCGTCGTCTTCTATCAGATTCTTGGATTATTCTTTCAATGATTTTGATGGTGTCGTTCAGCCTGGACTAGGAGCATGTTCCAATCTGGAGAGGTTTCGAGCAGGTTTCAATTTTCTATCCGGGCCTATTCCTGTTGATATTTTTGATGCTGTCTCTCTTAAAGAAATATCACTGCCCCTCAATAAGCTCACTGGAAGAATTGGTGATGGCATTGTTAGCCTCACCAATCTCACAGTTTTGGAGCTTTACTCCAATCATTTCACTGGCCCCATTCCGCAGGATATCGGTAATCTTTCCAAATTGGAACGGTTGCTTCTTCATGTCAACAATCTCACAGGTACTATGCCCCCATCTCTGATGAAGTGTGCCAATCTTGTGGTGTTGAATTTAAGGGTCAACAAGTTGGAGGGGAATCTCTCAGATTTCAATTTCTCAGGATTCCTCAGACTTGCTACACTTGACCTTGGCAACAATATTTTCACTGGTGTTTTACCACCAACACTTTATGCATGCAAGTCACTTGCAGCATTAAGGCTAGCATCTAATCAACTTGAGGGGCAGGTTTCCCCCGCGATACTTGGACTTGAGTCTCTTTCTTTCCTATCAATATCCACTAACAAGCTGAGGAATATAACTGGTGCTCTGAGAATTCTGACAGGGCTCAAGAAGCTTAGTACCCTTATGCTGTCCAAGAATTTTTTGAATGAAATGATGCCACAGGATGTAAACTTAACAGGACAAGATGGATTCCAAAAGCTGCAGGTTCTCGGCTTGGGTGGTTGTCAATTTACTGGTCAAATACCAGGCTGGCTAGCAAACCTGACGAAGATTGAGGCCATGGACCTGTCCTTTAATAAGTTTAGTGGTCCAATTCCTCCTTGGTTGGGTGCACTTCCTCAGCTTTTTTACATAGACTTGTCTTTTAACCTCCTTACCGGAACATTTCCGACGGAGCTGACAAGACTCCCAGCACTAACATCACAACAGGCAAATGATAAAGTAGAAAGGACTTACTTGGAGTTACCTGTGTTTGCTAATGCCAACAATGTTTCCCTATTGCAATACAATCAGCTTTCTAGCCTTCCACCAGCATTGTATCTCAAAAACAATCGCCTTAGCGGCAGTATCCCGATTGAGATTGGCCAACTGAGTGTCCTTCATCAGCTGGACCTGAAGAACAACAACTTCTCCGGCAATATACCGGTTCAAATTTCAAACTTGACCAATTTAGAGACACTAGACCTCTCAGGAAACCACCTATCTGGTGAAATTCCTGATTCACTCAAAAGATTGCATTTCTTGTCCTTTTTCAGTGTAGCATTCAATGATCTTCAAGGACAGATACCAACCGGTGGTCAATTTGATACTTTCTCCTTTTCCAGCTTTGACGGAAACACACAATTGTGTGGTTCAGTTATTCAGCGCTCTTGTCCTTCTCAACAAAATACTAACAGTGCTGCAGCTAGTGGCAGTTCAAACAAAAAGGTATTGATTGGAATTATTAGTGCAGCTTGCTTTGGCTTTTCTTCCTTGGTGACCTTGTTGACACTGTGGATACTCTCCAAGAGGAGGGTCAATCCAGGAGCAGCTTCTGACAAGATTGAACTGGAATCAATTGCTACCTACTCCAACAATGGGGTTTATCCTGAGATTGACAACGAGGCTAGCCTAGTGGTCTTGTTCCCCAACAAAACTAATGAAACCAAGGATCTTACAATATTTGAGATCATAAAGGCCACTGAGAATTTCAGTCAATCAAACATCATAGGATGTGGGGGTTTCGGTTTGGTTTATAAAGCAACATTACCGAATGGGACTAATCTAGCCATCAAGAAACTTTCAGGAGATTTGGGCCTTATGGAAAGGGAATTTAAAGCAGAAGTTGAGGCTTTGTCAACAGCACAACATGAGAATCTAGTGTCATTGCAAGGCTACTGCGTGCACGGTGGTTTCCGCCTTCTCATATACAACTACATGGAGAATGGAAGTCTGGATTACTGGTTGCATGAAAAGGCTGATGGTGCATCACCGCTTGATTGGCCAACTCGTTTGAAGATCGCACGAGGAGCAAGTTGTGGTTTGGCTTATCTGCATCAGATATGTGAACCGCACATCGTGCATCGCGATATAAAGTCAAGCAATATACTCCTTAATGAAAAGTTTGAGGCGCGCGTTGCTGATTTTGGGTTGTCCCGGTTGATTCTTCCTTATCAGACCCATGTTACAACTGAACTTGTAGGTACATTAGGTTACATTCCCCCAGAGTACGGACAAGCATGGGTGGCTACTCTGAGAGGAGATGTCTACAGCTTCGGAGTTGTCTTGCTTGAGCTTCTCACCGGTAGGAGGCCGGTCGATGTAAGCAAGCCGAAAATGACAAGGGAATTGGTTGGCTGGGTTCAACAGATGAGATGTGAAGGAAAACAAGATCAAGTCTTTGACTCTTTTATTAGAGGAAAAGGCTTTGAAGGAGAGATGCTTCAGGTGCTGGATGTGGCTTGCATGTGTGTTAACCAGAATCCTGTCAAGAGACCCAGCATCAGAGAAGTTGTTGAATGGCTCAAGAATGTAGGATCATCCAACCAACAAGGAAACAAAGATTAG 3372 0.4327 MDGHAYPYTLVSSFFFCSHVTVINTTKDSILPFWVSLVLMRSASTLLPSFSCKYNYMVSNLIILPLLFSLLVVQASLICNQIDRDSLLEFSGNISISSPYPPLSWSSSSSSLDCCDWEGVTCDGDQRVTHLLLPSRGLFGVISPSLTNLAALSHLNLSHNRLSGNLQSQFFSLLNHLLVLDLSYNRLSGELPPFVADNSTSVVIQEVDLSSNLFNGTLPSSLLQHLAGGSLISFNVSNNSFTGQIPTSIFCTNDRNSSSSIRFLDYSFNDFDGVVQPGLGACSNLERFRAGFNFLSGPIPVDIFDAVSLKEISLPLNKLTGRIGDGIVSLTNLTVLELYSNHFTGPIPQDIGNLSKLERLLLHVNNLTGTMPPSLMKCANLVVLNLRVNKLEGNLSDFNFSGFLRLATLDLGNNIFTGVLPPTLYACKSLAALRLASNQLEGQVSPAILGLESLSFLSISTNKLRNITGALRILTGLKKLSTLMLSKNFLNEMMPQDVNLTGQDGFQKLQVLGLGGCQFTGQIPGWLANLTKIEAMDLSFNKFSGPIPPWLGALPQLFYIDLSFNLLTGTFPTELTRLPALTSQQANDKVERTYLELPVFANANNVSLLQYNQLSSLPPALYLKNNRLSGSIPIEIGQLSVLHQLDLKNNNFSGNIPVQISNLTNLETLDLSGNHLSGEIPDSLKRLHFLSFFSVAFNDLQGQIPTGGQFDTFSFSSFDGNTQLCGSVIQRSCPSQQNTNSAAASGSSNKKVLIGIISAACFGFSSLVTLLTLWILSKRRVNPGAASDKIELESIATYSNNGVYPEIDNEASLVVLFPNKTNETKDLTIFEIIKATENFSQSNIIGCGGFGLVYKATLPNGTNLAIKKLSGDLGLMEREFKAEVEALSTAQHENLVSLQGYCVHGGFRLLIYNYMENGSLDYWLHEKADGASPLDWPTRLKIARGASCGLAYLHQICEPHIVHRDIKSSNILLNEKFEARVADFGLSRLILPYQTHVTTELVGTLGYIPPEYGQAWVATLRGDVYSFGVVLLELLTGRRPVDVSKPKMTRELVGWVQQMRCEGKQDQVFDSFIRGKGFEGEMLQVLDVACMCVNQNPVKRPSIREVVEWLKNVGSSNQQGNKD* 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1670 1123 Pfam Leucine rich repeat N-terminal domain 83 123 IPR013210 -
Lja3g1670 1123 SMART LRR_typ_2 663 687 IPR003591 -
Lja3g1670 1123 SMART LRR_typ_2 174 198 IPR003591 -
Lja3g1670 1123 SMART LRR_typ_2 330 354 IPR003591 -
Lja3g1670 1123 SMART LRR_typ_2 451 473 IPR003591 -
Lja3g1670 1123 SMART LRR_typ_2 477 500 IPR003591 -
Lja3g1670 1123 SMART LRR_typ_2 554 585 IPR003591 -
Lja3g1670 1123 SMART LRR_typ_2 149 173 IPR003591 -
Lja3g1670 1123 Gene3D Phosphorylase Kinase; domain 1 806 914 - -
Lja3g1670 1123 Gene3D Ribonuclease Inhibitor 82 203 IPR032675 -
Lja3g1670 1123 SUPERFAMILY L domain-like 506 734 - -
Lja3g1670 1123 ProSiteProfiles Leucine-rich repeat profile. 665 687 IPR001611 GO:0005515
Lja3g1670 1123 Pfam Leucine Rich Repeat 665 687 IPR001611 GO:0005515
Lja3g1670 1123 Gene3D Ribonuclease Inhibitor 304 398 IPR032675 -
Lja3g1670 1123 Pfam Protein kinase domain 840 1108 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1670 1123 ProSitePatterns Serine/Threonine protein kinases active-site signature. 961 973 IPR008271 GO:0004672|GO:0006468
Lja3g1670 1123 ProSiteProfiles Protein kinase domain profile. 839 1110 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1670 1123 SMART serkin_6 839 1110 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1670 1123 SUPERFAMILY RNI-like 206 577 - -
Lja3g1670 1123 PANTHER OS06G0692500 PROTEIN 61 1115 - -
Lja3g1670 1123 SUPERFAMILY Protein kinase-like (PK-like) 824 1110 IPR011009 -
Lja3g1670 1123 SUPERFAMILY L domain-like 105 250 - -
Lja3g1670 1123 Gene3D Ribonuclease Inhibitor 399 742 IPR032675 -
Lja3g1670 1123 ProSitePatterns Protein kinases ATP-binding region signature. 845 868 IPR017441 GO:0005524
Lja3g1670 1123 PANTHER LEUCINE RICH REPEAT KINASE 2 61 1115 - -
Lja3g1670 1123 PRINTS Leucine-rich repeat signature 663 676 - -
Lja3g1670 1123 PRINTS Leucine-rich repeat signature 177 190 - -
Lja3g1670 1123 Gene3D Ribonuclease Inhibitor 204 303 IPR032675 -
Lja3g1670 1123 Gene3D Transferase(Phosphotransferase) domain 1 915 1123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1670 Lja-Chr3 18475738 18479760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1670 60 770 Miscellaneous Gene Families AT1G17240 51.182 0.0 657
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Lja3g1670 Pkinase 4.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1670 - - gmx:100807989 1689.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1670 3 18475738 18479760 Lja3g1670 3 18475738 18479760 ECH