Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1668 ATGTCGGTGGATCCACGGCCTGTGCTGGTGTTTATGTTCATCATCAGCACCTGCATTCTGGTCATCAATGGTGACACAGATCCAAATGATGCTGCTGCTCTAAAGAATCTGTTTCAAAGTATGAGCTCAGCATCCCAGCTAAATTGGCCTGCAAATGGTAATGATCCTTGTGGACAGTCTTGGAAAGGCATCACTTGCTCAGGCAACCGAGTTACAGAGATTAAATTACCTGGCCTTGGACTAACTGGGACTTTGGGCTATCTGCTACAAAGCTTGTCATCTCTGACAAACCTAGATCTGAGTAACAACAATCTTGGTAACACCATACCCTACAGCCTTCCTCAAAATTTGAAGCACTTAAATCTGGCTAATAATAATTTCAATGGGGGGATACCTTATTCTATTTCTGATATGACTTCACTTGTAGACCTGAATCTCGGTCACAATCAGCTGCAGCAAGGACTGACTGTGGACTTTGAAAAGCTTTCTTCCCTCTCTACATTGGATGTCTCGTTTAATTCCTTGACAGGTGACCTACCTCAGACTATGAGCTCTCTTTCAAGCATAACCACCATGAACCTGCAGAGCAATCAGTTTACAGGCACCATTGATGTCCTTGCTAATCTCCCTCTTGAGACTTTGAATGTCGAAAACAATCATTTTACCGGCTGGATACCACAACAGCTGAAAGGCATAAACCTACAAACGGGTGGTAATACATGGAGCTCGGGCCCTGCACCGCCACCTCCTCCGGGGACACCTACGGTTACAAAAGGCAACCGAGATCACAAGTCTGGTGGGCATAGCACCTCATCAGGTGCTGGCACAAGTGATGGAGGCAAAAAATCTGGTATTGGAGGTGGTGGCATTGCTGGAATAATTATCTCTATCCTAGTTGTTGGGGCGATAATAGCATTCTTTCTGGTAAAGAGAAGATCCAAGAAGTCAATTTCAGATGTGGAAAAGCTTGATAACCAGCCTTTGGCTCCTCTTACTTCAAATGAAGTACATGAAATGAATTCCATGCAAACTTCTAGTGTGATTGACTTGAAGACGTTTGATACTTCTGCGGCCACAATCAGTCTTAAACCCCCGCCTTTTGATCGTCATAAATCATTTGATGAGGATGAGTTTTCAAAGAAGCCAGCAATTGTCAAGAAGACCATAACTGCTCCAGCAAATGTGAAATCATATTCTATAGCTGACCTGCAGATTGCGACTGGAAGCTTCAGTGTGGACCAACTTCTTGGTGAGGGGTGTTTTGGACGTGTATACCGTGCTCAATTTGATGATGGAAAGGTTCTTGCTGTGAAGAAGATAGATTCATTGGTCCTTCCCAATGATTCGTCTGAAGATTTTGTAGAACTAGTTTCAAACATCTCCCATCTGCATCATCCCAATGTGACAGAGCTTGTAGGTTATTGTTCAGAGCATGGACAACACCTCCTAGTCTATGAGTTTCATAAAAGTGGATCACTGCATGACTTCCTCCACCTACCTGATGAGTATAGCAAACCATTAATATGGAATTCACGTGTCAAGATTGCATTGGGGATTGCACGTGCTCTAGAGTACTTACATGAAGTTTGTTCACCATCAGTTGTTCATAAGAATATTAAATCAGCCAACATATTACTTGATGCTGATATTAATCCTCATCTTTCAGACAGTGGATTGGCCAGCTATATTCCTGGTGCAAACCAGGTGCTAATGAATAATGCTGGATCTGGATACGAAGCTCCGGAAGTTAGCTTGTCTGGTCAATATACTCTCAAGAGTGATGTATACGGCTTTGGAGTTGTCATGTTGGAGCTTATTAGTGGACGGAAACCATTTGATAGCTCAAGATCAAGGTTTGAGCAGTCTTTGGTTCGATGGGCAACACCTCAACTCCACGATATTGATGCATTGGCTAAAATGGTTGATCCTGCATTAGAAGGGCTATACCCTGTTAAGTCTCTTTCTCGATTTGCTGATGTCATTGCTCTTTGTGTTCAGCCGGAACCTGAATTCCGACCACCTATGTCAGAAGTGGTTCAAGCACTGGTTCGATTAGTGCAACGAACTAACATGAGCAAGCGGACACAAGGAGGAACCCCAAGAGCGGGTGATGTTCCAGACACACAAGACTTCTAA 2136 0.4359 MSVDPRPVLVFMFIISTCILVINGDTDPNDAAALKNLFQSMSSASQLNWPANGNDPCGQSWKGITCSGNRVTEIKLPGLGLTGTLGYLLQSLSSLTNLDLSNNNLGNTIPYSLPQNLKHLNLANNNFNGGIPYSISDMTSLVDLNLGHNQLQQGLTVDFEKLSSLSTLDVSFNSLTGDLPQTMSSLSSITTMNLQSNQFTGTIDVLANLPLETLNVENNHFTGWIPQQLKGINLQTGGNTWSSGPAPPPPPGTPTVTKGNRDHKSGGHSTSSGAGTSDGGKKSGIGGGGIAGIIISILVVGAIIAFFLVKRRSKKSISDVEKLDNQPLAPLTSNEVHEMNSMQTSSVIDLKTFDTSAATISLKPPPFDRHKSFDEDEFSKKPAIVKKTITAPANVKSYSIADLQIATGSFSVDQLLGEGCFGRVYRAQFDDGKVLAVKKIDSLVLPNDSSEDFVELVSNISHLHHPNVTELVGYCSEHGQHLLVYEFHKSGSLHDFLHLPDEYSKPLIWNSRVKIALGIARALEYLHEVCSPSVVHKNIKSANILLDADINPHLSDSGLASYIPGANQVLMNNAGSGYEAPEVSLSGQYTLKSDVYGFGVVMLELISGRKPFDSSRSRFEQSLVRWATPQLHDIDALAKMVDPALEGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVRLVQRTNMSKRTQGGTPRAGDVPDTQDF* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1668 711 Gene3D Ribonuclease Inhibitor 138 242 IPR032675 -
Lja3g1668 711 ProSiteProfiles Protein kinase domain profile. 410 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g1668 711 PRINTS Leucine-rich repeat signature 162 175 - -
Lja3g1668 711 PRINTS Leucine-rich repeat signature 95 108 - -
Lja3g1668 711 Gene3D Transferase(Phosphotransferase) domain 1 489 701 - -
Lja3g1668 711 MobiDBLite consensus disorder prediction 690 711 - -
Lja3g1668 711 Gene3D Phosphorylase Kinase; domain 1 372 487 - -
Lja3g1668 711 Gene3D Ribonuclease Inhibitor 29 137 IPR032675 -
Lja3g1668 711 Pfam Protein tyrosine and serine/threonine kinase 412 682 IPR001245 GO:0004672|GO:0006468
Lja3g1668 711 Pfam Leucine rich repeat 94 151 IPR001611 GO:0005515
Lja3g1668 711 MobiDBLite consensus disorder prediction 235 282 - -
Lja3g1668 711 SUPERFAMILY Protein kinase-like (PK-like) 392 682 IPR011009 -
Lja3g1668 711 SMART LRR_typ_2 162 186 IPR003591 -
Lja3g1668 711 SMART LRR_typ_2 92 116 IPR003591 -
Lja3g1668 711 SMART LRR_typ_2 138 161 IPR003591 -
Lja3g1668 711 PANTHER STRUBBELIG-RECEPTOR FAMILY 6 PROTEIN 16 704 - -
Lja3g1668 711 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Lja3g1668 711 ProSitePatterns Protein kinases ATP-binding region signature. 416 439 IPR017441 GO:0005524
Lja3g1668 711 SUPERFAMILY L domain-like 26 229 - -
Lja3g1668 711 PANTHER OS01G0253100 PROTEIN 16 704 IPR045271 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1668 Lja-Chr3 18446617 18455711 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1668 8 711 Strubbelig Receptor Gene Family AT1G53730 65.090 0.0 859
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Lja3g1668 PK_Tyr_Ser-Thr 3.9e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1668 - - gmx:100780323 1091.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1668 3 18446617 18455711 Lja3g1668 3 18446617 18455711 ECH