Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1664 ATGGTTGCACCGCCAGAGTCAAATGACACATTGGGTGAGTCCAATACCGTTGAGCTAACAGGGAAGATCATGGTGGTAGCTGTGATTTTCCTCTTCATGGTTGTTGTGTTTGTTCTGTTACTTCATCTCTACGCCAAATGGTTCTGGTGGCGCATTGAGGAAAGCACAGCTCCTCAGCCACTGCACCGGCGGCGGCGCCGCCGCCGCTTTGTCTTTGCACCTGGTCAAGACCCGGTTGTCTATGGTGCTAACCAAACTGGGCTTGACCCTGCAGTTCTTAAGTCCTTGCCGGTGTTGGTGGTCAAACCAGAGGATTTCAAAGATGGTTTGGAGTGTGCAGTTTGCATCTCTGAGATTGTTGAAGGCGAGAAGGCAAGGCTGTTACCTAAATGCAATCATGGGTTTCATGTGGATTGTATAGATATGTGGTTTCAATCCCATTCTACCTGCCCTCTTTGTAGAAACCCTGTTGCCTCTGAATCCTGTAAACCCAATGGTTCTTCAAATGCTGAAGAGAATGTTTCAGGGGATAGTGAGCAATTAGAAGCTGAAAATTCTGGTGCTATGGATGGCTTAGAGGCTTCAAATTTTCCCACAAATGTTTTAGTTTGGGGGGACCAGACCCAAGTAGCTTCCTTTGGTGTTTCCTTGGAAGAAGGCACTTCTCAACAGCCACCCTGCACCTCATCATCTCCTTCAGCTAGTGATGGTAGATGTCATGGCATGTTGGTGATTGATATACCAAATGAGTTCACTTCTTCCTCTTTATCACCTTCTGGGAATAGGTGTGTTGAAGATGATTTGAAATCACCAATGACAACCAGATTAAGGTCATTTAAGAGGCTCTTAAGCAGAGACAAAAGGTTGAGTCCTTGTAGTCCAAGTTCTATAGATGTGGAACAAGCTCAAAGCTAG 915 0.4601 MVAPPESNDTLGESNTVELTGKIMVVAVIFLFMVVVFVLLLHLYAKWFWWRIEESTAPQPLHRRRRRRRFVFAPGQDPVVYGANQTGLDPAVLKSLPVLVVKPEDFKDGLECAVCISEIVEGEKARLLPKCNHGFHVDCIDMWFQSHSTCPLCRNPVASESCKPNGSSNAEENVSGDSEQLEAENSGAMDGLEASNFPTNVLVWGDQTQVASFGVSLEEGTSQQPPCTSSSPSASDGRCHGMLVIDIPNEFTSSSLSPSGNRCVEDDLKSPMTTRLRSFKRLLSRDKRLSPCSPSSIDVEQAQS* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1664 304 Pfam Ring finger domain 111 154 IPR001841 -
Lja3g1664 304 MobiDBLite consensus disorder prediction 161 186 - -
Lja3g1664 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 159 IPR013083 -
Lja3g1664 304 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 7 301 IPR044675 -
Lja3g1664 304 PANTHER RING-H2 FINGER PROTEIN ATL3 7 301 - -
Lja3g1664 304 CDD RING-H2_EL5_like 111 154 - -
Lja3g1664 304 SMART ring_2 112 153 IPR001841 -
Lja3g1664 304 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Lja3g1664 304 SUPERFAMILY RING/U-box 92 158 - -
Lja3g1664 304 MobiDBLite consensus disorder prediction 161 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1664 Lja-Chr3 18408164 18409327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1664 18 287 C3H Transcription Factor Family AT1G53820 44.444 2.96e-68 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1664 - - gmx:100775523 404.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1664 3 18408164 18409327 Lja3g1664 3 18408164 18409327 ECH