Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1659 ATGAGCAAGCTAAGACAAGCCTACGCCGGAATCTCAGATTCCGGCAACCACATTTCCCTTTCTAAGTCCAAGAAGAAGCTCATCTTAGCCCTCTTCTCCGCCCTTCTACTGGCCGCCTCCGTGGCGGCCATAGTCGCCGGAGTAAACTCCCACAAGAAAAACACCACCTCCTCCTCCAGCATCACCGCCTCCTCCCTCACCCTCTCCCACCACTCCCACACCATAATCAAAACCGCCTGCAGCTCCACATTCTACCCTGAGCTCTGCTTCTCCGCCGTCGCCTCCGAGCCCGGCGTGACCCACAAAGTCACCTCCCACAAAGACGTCATAAGCCTCGTCCTCAACATCACCTTCAGAGCCGTGGAGCAAAACTTCTTCACTGTGGAGAAGCTCCTCGCCAGAAGAAAAGGCCTCACCGAGAGAGAGAAGACCGCACTCCATGATTGCTTAGAAACCATTGATGAAACCCTCGACGAGCTCAAAGAAGCGCAGAGCGATCTCAAGCTTTACCCGAACAAGAAGACTCTCTACCAGCACGCTGATGACCTCAAAACTCTCATCTCCTCCGCCATAACCAACCAGCAGGTGAGGAAGGCTCTGGAGAAAGGGCAGATTCACGTGGAGCATATGTGCAGCAATGCTTTAGCCATGGCGAAGAACATGACTGATTCTGATATTGCAGATTTTGAGAAGAACAGTGTTGCAGGGGAGAAAACAGGGAGCAGGAAATTGATGGAGGCAGGGGAGGTTTGGCCGGAGTGGATTTCTATAAAAGCAGGGGTTTACAGAGAGAATGTGGAGGTTCCAAAGAAGAAGACGAATATCATGTTCTTGGGTGATGGTAGAACTACCACCATCATCACCGGTAGCAGAAATGTTGTTGATGGAAGCACCACTTTCCACTCTGCCACCGTTGCCGTAGTGGGTGGAAATTTCTTGGCACGAGACATAACTTTCGAGAACACAGCAGGGTCCTCAAAGCACCAAGCAGTGGCCCTACGAGTGGGCGGGGACCTCTCCGCCTTCTACAATTGCGACATCCTGGCCTACCAAGACACACTCTACGTCCACAACAACCGCCAATTCTTCGTGAACTGCCTCATAGCAGGGACAGTCGACTTCATCTTCGGCAACTCCGCGGTGGTGTTCCAGAACTGTGACATCCACGCGCGGCGACCGGGCTCAGGCCAGAAGAACATGGTCACAGCCCAGGGCCGCGTGGACCCGAACCAGAACACCGGCATTGTGATCCAAAAGTGCAGGATTGGTGCCACTAAGGACTTGGAACCTGTGAAGAATAGCTTCCCTACTTATCTTGGGAGGCCATGGAAGGAGTATTCAAGGACTGTGTTCATGCAGAGTAGTATCAGTGATGTGATTGACCCTGCTGGATGGCATGAGTGGAGTGGGAACTTTGCATTAAACACTTTGGTTTACAGGGAGTATCAGAACACTGGGCCTGGTGCTGGAACCTCTAAGAGGGTTGCTTGGAAAGGGGTTAAGGTTATTACAAGTGCTTCTGAGGCCCAGGCTTTTACTCCTGGGAAACAAACCAAAACAATGGATTCTATGAAGTCCTTCAAAGGATATGGCAAAGTTGATGAAATGGAGCAACAAGCCTTTCAGAAAAAGACACGTAAGCGCATGATCATCATGATCATCTCTTCCGTGATTCTAGTAGCGGTGATCATCGCCGCGGTTGTAGGATTCGTGGTGCACAAGCGCAGCACCTCATCACAACCCAACTCGGTCTCACCCACTGAGTCAACCCCGGCCGCGCAACTCAAAGCGGTTTGCATGGTGACTCAGTACCCCAACTCGTGCTTCTCCGCAATCTCCTCCTTACCGGATTCCAACACCACCGATGCCAAAACCCTCTTCAAGCTCTCCCTCCGTGCCGCGATCGATGAGCTGTCGAAACTCACGCGCGTGACTCCCAAACTCCACGCCGTTAACGACACGCGCCTCCGGAAGGCAATCGCCGTCTGCGCCAATGTCCTTAACGACTCGCTGGGTAGTCTCAACGACTCGATCTCCTCCCTCGACGGCGAGATCCCATCTCCGGCGAAGGTCGCCGACTTAGAGACATGGCTCAGCGCCGCCCTTACGGACCACGACACGTGCTTGGACGCCATTGGTGAATTGAACTCCACCGCCGCGCGTGGAGTTCTTCTGGAGATGGGGACCGCCATGAGAAACTCGACGGAGTTTGCCAGTAACAGCTTGGCGATCGTGACGAAGATCTTACGGCTGGCCGCGAAGTTCCAACGGCGGAGGCTGCTCGGGGAGTTCCCGGAGTGGGTGGGTGCGGCGGAGCGGAGGCTGCTGGCGGCCGGGAATGAGACGGTGCCTGATGCGGTGGTGGCGAAGGACGGGACTGGACAGTTCAGGACGATTGCGGAGGCGCTGAAGGGGGTGGCGAAGAAGAGTGAGAAGAGGTTTGTGGTGTATGTGAAGAAAGGAGAGTATGTTGAGAACATTGATTTGGATAAGAACACTTGGAATGTGATGATCTACGGCGATGGCATGACGGAGACCATTATCTCCGGTGGCCGGAACTTCATCGACGGCACGCCCACTTTTGAAACCGCCACTTTTGCTGCTAAGGGCAAGGGATTCATTGCCAAAGACATTAAGTTTGTGAACACCGCAGGTGCAGCTAAGCACCAGGCTGTAGCAATGAGATCAGGCTCAGATCGTTCAGTGTTCTACAGATGCTCGTTTGACGGCTTCCAAGACACCCTCTACGCACATTCCAACCGCCAATTCTACCGCGAATGTGACATCACTGGCACCATAGACTTCATATTCGGCAATGCAGCTTCAATTTTCCAAAACTGCAAGATCATGCCTAGGCAGCCTATGCCAAACCAGTTCAACACCATCACAGCTCAGGGCAAGAAGGATCCAAACCAGAACACTGGTATTGTGATTCAGAAATCAACCATCACCCCCTTAGAAAGCACTTACACAGCACCAACTTACCTTGGCAGGCCTTGGAAAGATTTCTCCACCACTTTGATCATGCAATCTGAGATTGGATCATTCTTGAAGCCAGTTGGGTGGGTGAGTTGGGTGGCAAATGTGGATCCTCCAGCTACCATATTCTATGCTGAGCACCAGAATTCTGGGCCTGGTTCAGATGTGGCCCAGAGGGTTAAATGGACCGGTTATAAGTCCACACTTACTGCTGATGACTTGGGGAAGTTCACTTTGGCATCGTTTATTCAAGGCCCTGAGTGGTTACCAGACACTGCCGTGGCGTTTGATTCTACCTAG 3279 0.5273 MSKLRQAYAGISDSGNHISLSKSKKKLILALFSALLLAASVAAIVAGVNSHKKNTTSSSSITASSLTLSHHSHTIIKTACSSTFYPELCFSAVASEPGVTHKVTSHKDVISLVLNITFRAVEQNFFTVEKLLARRKGLTEREKTALHDCLETIDETLDELKEAQSDLKLYPNKKTLYQHADDLKTLISSAITNQQVRKALEKGQIHVEHMCSNALAMAKNMTDSDIADFEKNSVAGEKTGSRKLMEAGEVWPEWISIKAGVYRENVEVPKKKTNIMFLGDGRTTTIITGSRNVVDGSTTFHSATVAVVGGNFLARDITFENTAGSSKHQAVALRVGGDLSAFYNCDILAYQDTLYVHNNRQFFVNCLIAGTVDFIFGNSAVVFQNCDIHARRPGSGQKNMVTAQGRVDPNQNTGIVIQKCRIGATKDLEPVKNSFPTYLGRPWKEYSRTVFMQSSISDVIDPAGWHEWSGNFALNTLVYREYQNTGPGAGTSKRVAWKGVKVITSASEAQAFTPGKQTKTMDSMKSFKGYGKVDEMEQQAFQKKTRKRMIIMIISSVILVAVIIAAVVGFVVHKRSTSSQPNSVSPTESTPAAQLKAVCMVTQYPNSCFSAISSLPDSNTTDAKTLFKLSLRAAIDELSKLTRVTPKLHAVNDTRLRKAIAVCANVLNDSLGSLNDSISSLDGEIPSPAKVADLETWLSAALTDHDTCLDAIGELNSTAARGVLLEMGTAMRNSTEFASNSLAIVTKILRLAAKFQRRRLLGEFPEWVGAAERRLLAAGNETVPDAVVAKDGTGQFRTIAEALKGVAKKSEKRFVVYVKKGEYVENIDLDKNTWNVMIYGDGMTETIISGGRNFIDGTPTFETATFAAKGKGFIAKDIKFVNTAGAAKHQAVAMRSGSDRSVFYRCSFDGFQDTLYAHSNRQFYRECDITGTIDFIFGNAASIFQNCKIMPRQPMPNQFNTITAQGKKDPNQNTGIVIQKSTITPLESTYTAPTYLGRPWKDFSTTLIMQSEIGSFLKPVGWVSWVANVDPPATIFYAEHQNSGPGSDVAQRVKWTGYKSTLTADDLGKFTLASFIQGPEWLPDTAVAFDST* 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1659 1092 ProSitePatterns Pectinesterase signature 2. 368 377 IPR033131 -
Lja3g1659 1092 Coils Coil 146 166 - -
Lja3g1659 1092 Gene3D Invertase/pectin methylesterase inhibitor family protein 594 748 IPR035513 -
Lja3g1659 1092 Pfam Pectinesterase 255 516 IPR000070 GO:0030599|GO:0042545
Lja3g1659 1092 Pfam Pectinesterase 785 1078 IPR000070 GO:0030599|GO:0042545
Lja3g1659 1092 PANTHER PECTINESTERASE 1-RELATED 7 234 - -
Lja3g1659 1092 PANTHER PECTINESTERASE 1-RELATED 255 514 - -
Lja3g1659 1092 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 74 222 IPR035513 -
Lja3g1659 1092 TIGRFAM PME_inhib: pectinesterase inhibitor domain 57 195 IPR006501 GO:0004857
Lja3g1659 1092 TIGRFAM PME_inhib: pectinesterase inhibitor domain 578 747 IPR006501 GO:0004857
Lja3g1659 1092 Gene3D Invertase/pectin methylesterase inhibitor family protein 71 222 IPR035513 -
Lja3g1659 1092 SUPERFAMILY Pectin lyase-like 785 1089 IPR011050 -
Lja3g1659 1092 PANTHER PECTINESTERASE 7 234 - -
Lja3g1659 1092 PANTHER PECTINESTERASE 255 514 - -
Lja3g1659 1092 PANTHER PECTINESTERASE 528 1090 - -
Lja3g1659 1092 CDD PMEI-like_3 597 750 - -
Lja3g1659 1092 ProSitePatterns Pectinesterase signature 2. 929 938 IPR033131 -
Lja3g1659 1092 SMART PMEI_2 71 217 IPR006501 GO:0004857
Lja3g1659 1092 SMART PMEI_2 590 744 IPR006501 GO:0004857
Lja3g1659 1092 Pfam Plant invertase/pectin methylesterase inhibitor 595 744 IPR006501 GO:0004857
Lja3g1659 1092 Pfam Plant invertase/pectin methylesterase inhibitor 75 217 IPR006501 GO:0004857
Lja3g1659 1092 PANTHER PECTINESTERASE 1-RELATED 528 1090 - -
Lja3g1659 1092 CDD PMEI-like_3 78 222 - -
Lja3g1659 1092 Gene3D - 779 1092 IPR012334 -
Lja3g1659 1092 Gene3D - 244 528 IPR012334 -
Lja3g1659 1092 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 595 749 IPR035513 -
Lja3g1659 1092 SUPERFAMILY Pectin lyase-like 254 516 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1659 Lja-Chr3 18317621 18336956 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1659 67 516 Carbohydrate Esterase AT3G14310 65.341 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1659 - - pvu:PHAVU_010G123100g 1555.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1659 3 18317621 18336956 Lja3g1659 3 18317621 18336956 ECH